Strain Fitness in Escherichia coli BW25113 around b4122

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,342,705	-				+0.2
4,342,718	+				-0.0
4,342,719	-				+0.2
4,342,719	-				-0.7
4,342,720	-				+0.9
4,342,773	+				+0.0
4,342,786	-				+0.2
4,342,786	-				+0.3
4,342,788	+				-0.1
4,342,797	-				-0.2
4,342,817	+				-0.0
4,342,831	-				-0.3
4,342,831	-				+0.1
4,342,913	+				-0.4
4,342,913	+				+0.2
4,342,937	+				+0.3
4,342,966	+				-0.3
4,343,050	-	yjdF	b4121	0.16	-1.1
4,343,151	+	yjdF	b4121	0.32	+0.4
4,343,169	-	yjdF	b4121	0.34	-0.2
4,343,182	-	yjdF	b4121	0.37	-0.0
4,343,182	-	yjdF	b4121	0.37	+0.1
4,343,242	+	yjdF	b4121	0.46	-0.2
4,343,268	-	yjdF	b4121	0.50	+0.2
4,343,289	+	yjdF	b4121	0.53	+0.5
4,343,292	+	yjdF	b4121	0.54	-0.1
4,343,292	+	yjdF	b4121	0.54	-0.6
4,343,299	+	yjdF	b4121	0.55	-0.0
4,343,313	-	yjdF	b4121	0.57	+0.0
4,343,313	-	yjdF	b4121	0.57	-0.5
4,343,376	-	yjdF	b4121	0.67	-0.6
4,343,399	+	yjdF	b4121	0.71	-0.1
4,343,402	-	yjdF	b4121	0.71	+0.5
4,343,516	+	yjdF	b4121	0.90	-0.6
4,343,516	+	yjdF	b4121	0.90	+0.6
4,343,527	+				+0.2
4,343,546	+				-0.6
4,343,547	+				+1.5
4,343,547	+				+0.4
4,343,579	+				+0.4
4,343,579	+				-0.0
4,343,666	+				+0.2
4,343,684	-				-0.3
4,343,700	+				-0.1
4,343,715	+				-0.4
4,343,815	+				+0.5
4,343,826	-				+0.1
4,343,836	-				+0.8
4,343,836	-				+0.1
4,343,868	-	fumB	b4122	0.10	+0.2
4,343,942	+	fumB	b4122	0.15	-0.5
4,343,980	-	fumB	b4122	0.17	-0.1
4,343,980	-	fumB	b4122	0.17	+0.1
4,344,047	+	fumB	b4122	0.21	+0.7
4,344,047	+	fumB	b4122	0.21	-0.2
4,344,056	+	fumB	b4122	0.21	+0.1
4,344,099	-	fumB	b4122	0.24	+0.1
4,344,103	+	fumB	b4122	0.24	+0.4
4,344,193	+	fumB	b4122	0.30	-0.5
4,344,206	-	fumB	b4122	0.31	-0.1
4,344,206	-	fumB	b4122	0.31	+0.1
4,344,320	+	fumB	b4122	0.37	+0.2
4,344,320	+	fumB	b4122	0.37	-0.3
4,344,466	+	fumB	b4122	0.46	+0.7
4,344,466	+	fumB	b4122	0.46	-0.6
4,344,609	-	fumB	b4122	0.55	+0.2
4,344,677	-	fumB	b4122	0.59	+0.1
4,344,757	+	fumB	b4122	0.64	+0.2
4,344,868	-	fumB	b4122	0.71	+0.3
4,344,871	+	fumB	b4122	0.71	+0.1
4,344,888	-	fumB	b4122	0.72	-0.5
4,344,923	-	fumB	b4122	0.74	-0.1
4,344,924	+	fumB	b4122	0.74	+0.2
4,344,945	-	fumB	b4122	0.75	+0.3
4,344,945	-	fumB	b4122	0.75	-0.0
4,344,945	-	fumB	b4122	0.75	-0.2
4,345,028	+	fumB	b4122	0.80	-0.2
4,345,028	+	fumB	b4122	0.80	+0.6
4,345,098	-	fumB	b4122	0.85	+0.1
4,345,098	-	fumB	b4122	0.85	-0.7
4,345,098	-	fumB	b4122	0.85	-0.2
4,345,179	-	fumB	b4122	0.90	+0.3
4,345,181	+	fumB	b4122	0.90	+1.0
4,345,181	+	fumB	b4122	0.90	-0.9
4,345,276	-				+0.3
4,345,289	+				+0.5
4,345,289	+				+2.5
4,345,294	+				+1.3
4,345,302	-				-0.1
4,345,358	-				-1.0
4,345,358	-				-0.5
4,345,368	-				-0.0
4,345,368	-				+0.1
4,345,392	+				-0.2
4,345,402	+				-0.4
4,345,444	-				+0.4
4,345,444	-				-0.2
4,345,461	-				+2.6
4,345,461	-				+2.6
4,345,472	+				-0.1
4,345,486	-				+0.3
4,345,486	-				+0.0
4,345,516	-				+0.2
4,345,532	+				+0.2
4,345,550	-				-0.3
4,345,608	+	dcuB	b4123	0.13	+0.5
4,345,687	+	dcuB	b4123	0.19	-0.2
4,345,687	+	dcuB	b4123	0.19	-0.1
4,345,708	-	dcuB	b4123	0.21	-0.7
4,345,708	-	dcuB	b4123	0.21	+0.2
4,345,766	+	dcuB	b4123	0.25	+0.0
4,345,835	-	dcuB	b4123	0.30	+0.1
4,346,100	+	dcuB	b4123	0.50	-1.3
4,346,100	+	dcuB	b4123	0.50	+0.7
4,346,160	+	dcuB	b4123	0.55	-0.1
4,346,160	+	dcuB	b4123	0.55	-0.3
4,346,207	-	dcuB	b4123	0.58	-0.1
4,346,207	-	dcuB	b4123	0.58	-0.6
4,346,281	-	dcuB	b4123	0.64	-0.3
4,346,281	-	dcuB	b4123	0.64	-0.1
4,346,283	+	dcuB	b4123	0.64	-0.1
4,346,320	-	dcuB	b4123	0.67	-0.1
4,346,320	-	dcuB	b4123	0.67	+1.1