Strain Fitness in Escherichia coli BW25113 around b4110

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,326,398	-	yjdA	b4109	0.56	+1.5
4,326,446	-	yjdA	b4109	0.58	+0.8
4,326,612	-	yjdA	b4109	0.65	+1.2
4,326,683	+	yjdA	b4109	0.68	+1.4
4,326,734	-	yjdA	b4109	0.71	+1.3
4,326,734	-	yjdA	b4109	0.71	+1.1
4,326,766	-	yjdA	b4109	0.72	+1.3
4,326,904	+	yjdA	b4109	0.78	+1.0
4,326,912	+	yjdA	b4109	0.79	+1.6
4,326,963	+	yjdA	b4109	0.81	+1.1
4,327,073	+	yjdA	b4109	0.86	+1.4
4,327,078	+	yjdA	b4109	0.86	+1.3
4,327,078	+	yjdA	b4109	0.86	+1.3
4,327,238	+				+0.6
4,327,238	+				+1.3
4,327,238	+				+1.3
4,327,238	+				+0.6
4,327,246	-				+0.7
4,327,246	-				+1.6
4,327,277	-				+2.0
4,327,406	+				-0.4
4,327,406	+				-0.8
4,327,406	+				-0.1
4,327,458	-				+1.6
4,327,468	-				+1.3
4,327,483	-	yjcZ	b4110	0.11	+1.3
4,327,488	+	yjcZ	b4110	0.12	+1.2
4,327,522	+	yjcZ	b4110	0.16	+1.4
4,327,522	+	yjcZ	b4110	0.16	+2.3
4,327,634	-	yjcZ	b4110	0.29	+1.2
4,327,663	+	yjcZ	b4110	0.32	+1.7
4,327,716	-	yjcZ	b4110	0.38	+0.9
4,327,739	+	yjcZ	b4110	0.41	+1.2
4,327,793	+	yjcZ	b4110	0.47	+1.2
4,327,794	+	yjcZ	b4110	0.47	+0.8
4,327,823	-	yjcZ	b4110	0.50	+1.2
4,327,853	+	yjcZ	b4110	0.53	+1.3
4,327,902	+	yjcZ	b4110	0.59	+1.3
4,327,902	+	yjcZ	b4110	0.59	+2.0
4,327,928	+	yjcZ	b4110	0.62	+0.9
4,328,009	+	yjcZ	b4110	0.71	+2.0
4,328,039	+	yjcZ	b4110	0.75	+1.2
4,328,039	+	yjcZ	b4110	0.75	+1.6
4,328,039	+	yjcZ	b4110	0.75	+0.5
4,328,183	+				+1.1
4,328,200	+				+1.3
4,328,208	-				+1.0
4,328,208	-				+0.7
4,328,267	+				+0.3
4,328,267	+				+0.7
4,328,555	+				+0.2
4,328,555	+				-0.3
4,328,615	+				-0.2
4,328,729	-	proP	b4111	0.14	+0.1
4,328,729	-	proP	b4111	0.14	-0.2
4,328,729	-	proP	b4111	0.14	+0.1
4,328,834	+	proP	b4111	0.21	-0.8
4,328,834	+	proP	b4111	0.21	+0.2
4,328,834	-	proP	b4111	0.21	-0.2
4,328,840	+	proP	b4111	0.21	+0.4
4,328,849	+	proP	b4111	0.22	+0.7
4,328,854	+	proP	b4111	0.22	-0.0
4,328,865	+	proP	b4111	0.23	-0.3
4,328,865	+	proP	b4111	0.23	-0.3
4,328,865	+	proP	b4111	0.23	+0.1
4,328,865	+	proP	b4111	0.23	-0.9
4,328,873	-	proP	b4111	0.23	+0.3
4,328,873	-	proP	b4111	0.23	+0.4
4,328,888	+	proP	b4111	0.24	-0.3
4,328,888	+	proP	b4111	0.24	-0.2
4,328,917	+	proP	b4111	0.26	-0.3
4,328,954	+	proP	b4111	0.29	-0.2
4,328,966	-	proP	b4111	0.29	+0.3
4,328,986	+	proP	b4111	0.31	-0.1
4,329,118	+	proP	b4111	0.39	-0.6
4,329,144	-	proP	b4111	0.41	+0.2
4,329,185	+	proP	b4111	0.44	+0.1
4,329,237	+	proP	b4111	0.47	+0.3
4,329,245	+	proP	b4111	0.48	-0.5