Strain Fitness in Escherichia coli BW25113 around b3925

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,111,624	+	yiiT	b3923	0.72	-0.2
4,111,629	+	yiiT	b3923	0.73	+0.2
4,111,632	-	yiiT	b3923	0.74	-0.9
4,111,632	-	yiiT	b3923	0.74	-0.9
4,111,632	-	yiiT	b3923	0.74	-0.8
4,111,632	-	yiiT	b3923	0.74	+1.0
4,111,633	+	yiiT	b3923	0.74	+0.9
4,111,633	+	yiiT	b3923	0.74	+0.5
4,111,639	-	yiiT	b3923	0.75	+0.2
4,111,641	-	yiiT	b3923	0.76	+1.3
4,111,641	-	yiiT	b3923	0.76	+0.4
4,111,644	-	yiiT	b3923	0.76	-0.8
4,111,644	-	yiiT	b3923	0.76	+0.1
4,111,647	+	yiiT	b3923	0.77	+0.3
4,111,651	+	yiiT	b3923	0.78	+0.3
4,111,654	-	yiiT	b3923	0.79	+0.1
4,111,654	-	yiiT	b3923	0.79	+0.2
4,111,656	-	yiiT	b3923	0.79	+0.2
4,111,669	+	yiiT	b3923	0.82	-0.1
4,111,683	+	yiiT	b3923	0.86	-0.2
4,111,691	-	yiiT	b3923	0.87	-0.5
4,111,697	+	yiiT	b3923	0.89	-0.0
4,111,702	-				+0.2
4,111,715	-				-0.5
4,111,737	+				+0.3
4,111,737	-				+0.0
4,111,750	+				-0.0
4,111,755	-				-0.0
4,111,755	-				+0.1
4,111,756	-				-0.1
4,111,756	-				-0.4
4,111,770	+				+0.5
4,111,770	+				+0.2
4,111,770	+				+0.1
4,111,774	-				+0.4
4,111,774	-				+0.8
4,111,774	-				+0.7
4,111,778	-				-0.2
4,111,778	-				+0.9
4,111,779	-				-0.2
4,111,809	-				+0.7
4,111,825	-	fpr	b3924	0.10	+0.8
4,111,865	+	fpr	b3924	0.16	+0.6
4,111,970	+	fpr	b3924	0.30	+0.1
4,111,990	-	fpr	b3924	0.32	-0.1
4,111,990	-	fpr	b3924	0.32	+0.4
4,112,036	+	fpr	b3924	0.38	+0.8
4,112,036	+	fpr	b3924	0.38	-0.0
4,112,059	+	fpr	b3924	0.41	-1.0
4,112,059	-	fpr	b3924	0.41	+0.5
4,112,082	-	fpr	b3924	0.45	+0.2
4,112,100	+	fpr	b3924	0.47	+0.2
4,112,157	+	fpr	b3924	0.55	-0.4
4,112,171	+	fpr	b3924	0.56	+0.7
4,112,226	+	fpr	b3924	0.64	-0.2
4,112,234	-	fpr	b3924	0.65	-0.1
4,112,290	+	fpr	b3924	0.72	-0.2
4,112,345	-	fpr	b3924	0.80	-0.4
4,112,383	-	fpr	b3924	0.85	+0.6
4,112,457	-				+2.1
4,112,472	-				+0.0
4,112,485	-				+0.1
4,112,591	+				-0.2
4,112,653	-				+7.8
4,112,718	+	glpX	b3925	0.12	+0.0
4,112,799	+	glpX	b3925	0.20	-0.9
4,112,810	-	glpX	b3925	0.22	-0.1
4,112,975	+	glpX	b3925	0.38	-0.2
4,112,980	+	glpX	b3925	0.38	-0.2
4,112,980	+	glpX	b3925	0.38	-0.0
4,112,991	-	glpX	b3925	0.39	-0.8
4,112,991	-	glpX	b3925	0.39	-1.6
4,112,991	-	glpX	b3925	0.39	-0.1
4,112,993	-	glpX	b3925	0.40	+0.3
4,113,010	+	glpX	b3925	0.41	+1.0
4,113,010	+	glpX	b3925	0.41	+0.5
4,113,014	-	glpX	b3925	0.42	-0.5
4,113,026	-	glpX	b3925	0.43	+0.3
4,113,055	-	glpX	b3925	0.46	+0.4
4,113,136	-	glpX	b3925	0.54	-0.8
4,113,136	-	glpX	b3925	0.54	+0.2
4,113,136	-	glpX	b3925	0.54	+0.7
4,113,136	-	glpX	b3925	0.54	+0.2
4,113,179	-	glpX	b3925	0.58	-0.4
4,113,184	-	glpX	b3925	0.59	-0.1
4,113,203	-	glpX	b3925	0.60	-0.7
4,113,239	+	glpX	b3925	0.64	-0.2
4,113,239	+	glpX	b3925	0.64	+0.0
4,113,240	+	glpX	b3925	0.64	+0.1
4,113,241	+	glpX	b3925	0.64	-0.0
4,113,248	-	glpX	b3925	0.65	+0.1
4,113,248	-	glpX	b3925	0.65	-0.0
4,113,249	-	glpX	b3925	0.65	+0.0
4,113,249	-	glpX	b3925	0.65	+0.1
4,113,268	-				+0.5
4,113,273	+	glpX	b3925	0.67	+0.5
4,113,286	+	glpX	b3925	0.69	-0.2
4,113,296	+	glpX	b3925	0.70	+0.1
4,113,325	+	glpX	b3925	0.73	-0.1
4,113,361	-	glpX	b3925	0.76	-0.3
4,113,361	-	glpX	b3925	0.76	+1.2
4,113,403	-	glpX	b3925	0.80	-0.2
4,113,408	-	glpX	b3925	0.81	-0.5
4,113,410	-	glpX	b3925	0.81	-0.4
4,113,413	+	glpX	b3925	0.81	-0.9
4,113,413	+	glpX	b3925	0.81	+0.3
4,113,460	-	glpX	b3925	0.86	-2.4
4,113,460	-	glpX	b3925	0.86	-0.1
4,113,467	+	glpX	b3925	0.87	-0.7
4,113,467	+	glpX	b3925	0.87	-0.9
4,113,468	+	glpX	b3925	0.87	+0.1
4,113,481	-	glpX	b3925	0.88	+0.0
4,113,554	+				+1.0
4,113,554	-				+0.1
4,113,554	-				+0.3
4,113,590	+				-0.4
4,113,655	+				-0.1
4,113,657	+				+0.3
4,113,667	-				+1.2
4,113,667	-				+0.1
4,113,669	+				+0.5
4,113,669	+				-0.1
4,113,669	+				+0.2
4,113,669	+				-0.2
4,113,669	+				-0.0
4,113,677	-				+0.3
4,113,800	-				-0.7
4,113,811	+				+0.2
4,113,811	+				-0.3
4,113,833	+				+0.4
4,113,898	+	glpK	b3926	0.11	-0.1
4,113,903	+	glpK	b3926	0.11	-0.3
4,113,906	+	glpK	b3926	0.11	+0.1
4,113,906	+	glpK	b3926	0.11	-0.5
4,113,906	+	glpK	b3926	0.11	+0.6
4,113,927	-	glpK	b3926	0.13	+3.0
4,113,948	-	glpK	b3926	0.14	-0.6
4,113,967	+				+0.6
4,113,975	+	glpK	b3926	0.16	+0.5
4,113,975	+	glpK	b3926	0.16	+0.0
4,113,980	+	glpK	b3926	0.16	+0.1
4,114,047	-	glpK	b3926	0.21	+1.1
4,114,047	-	glpK	b3926	0.21	+0.5
4,114,060	-	glpK	b3926	0.21	+0.1
4,114,089	+	glpK	b3926	0.23	-0.7
4,114,089	+	glpK	b3926	0.23	-0.4
4,114,105	-	glpK	b3926	0.24	-0.5
4,114,105	-	glpK	b3926	0.24	-0.6
4,114,133	-	glpK	b3926	0.26	-0.8
4,114,147	-	glpK	b3926	0.27	-0.6
4,114,173	+	glpK	b3926	0.29	-0.2
4,114,173	-	glpK	b3926	0.29	-0.1
4,114,176	+	glpK	b3926	0.29	+0.1
4,114,176	+	glpK	b3926	0.29	-0.6
4,114,181	-	glpK	b3926	0.29	-0.5
4,114,202	+	glpK	b3926	0.31	+0.3
4,114,211	+	glpK	b3926	0.31	-0.9
4,114,211	+	glpK	b3926	0.31	+0.2
4,114,219	-	glpK	b3926	0.32	-0.1
4,114,221	+	glpK	b3926	0.32	+0.1
4,114,221	-	glpK	b3926	0.32	-0.1
4,114,227	-	glpK	b3926	0.32	-0.4
4,114,318	+	glpK	b3926	0.39	+2.0
4,114,342	-	glpK	b3926	0.40	-0.8
4,114,429	+	glpK	b3926	0.46	+0.5
4,114,429	+	glpK	b3926	0.46	-0.2
4,114,437	-	glpK	b3926	0.46	-0.1
4,114,437	-	glpK	b3926	0.46	+0.1
4,114,437	-	glpK	b3926	0.46	-0.4
4,114,437	-	glpK	b3926	0.46	+0.4
4,114,453	-	glpK	b3926	0.47	+0.2
4,114,474	-	glpK	b3926	0.49	-0.3
4,114,510	-	glpK	b3926	0.51	-0.6
4,114,539	-	glpK	b3926	0.53	+0.7
4,114,557	+	glpK	b3926	0.54	-0.4
4,114,557	+	glpK	b3926	0.54	+0.7
4,114,569	-	glpK	b3926	0.55	+0.1