Strain Fitness in Escherichia coli BW25113 around b3919

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,107,771	+				+0.8
4,107,831	+				-0.6
4,107,831	+				+0.2
4,107,840	+				-0.9
4,107,929	+				-0.2
4,108,052	+	cdh	b3918	0.13	+0.2
4,108,052	+	cdh	b3918	0.13	+0.3
4,108,058	-	cdh	b3918	0.14	+0.9
4,108,168	-	cdh	b3918	0.28	-1.3
4,108,170	-	cdh	b3918	0.29	+0.1
4,108,170	-	cdh	b3918	0.29	+0.2
4,108,172	+	cdh	b3918	0.29	-0.1
4,108,183	+	cdh	b3918	0.30	-0.4
4,108,200	+	cdh	b3918	0.33	+0.7
4,108,200	+	cdh	b3918	0.33	-0.5
4,108,202	-	cdh	b3918	0.33	-0.0
4,108,251	+	cdh	b3918	0.39	-0.3
4,108,307	+	cdh	b3918	0.47	-0.1
4,108,307	+	cdh	b3918	0.47	-0.1
4,108,342	-	cdh	b3918	0.51	+0.1
4,108,386	-	cdh	b3918	0.57	+0.4
4,108,391	-	cdh	b3918	0.58	-0.3
4,108,417	-	cdh	b3918	0.61	+0.6
4,108,417	-	cdh	b3918	0.61	-0.1
4,108,532	-	cdh	b3918	0.77	-0.2
4,108,568	-	cdh	b3918	0.81	-0.2
4,108,568	-	cdh	b3918	0.81	+0.4
4,108,576	-	cdh	b3918	0.82	-0.5
4,108,579	+	cdh	b3918	0.83	-0.3
4,108,579	+	cdh	b3918	0.83	+0.0
4,108,601	-	cdh	b3918	0.86	-0.1
4,108,651	+				-0.1
4,109,521	-				-0.9
4,109,552	-				+0.0
4,109,575	-				+0.1
4,109,575	-				+1.3
4,109,671	+				+0.5
4,109,675	+				+0.5
4,109,675	+				+0.1
4,109,727	+	yiiQ	b3920	0.15	+0.0
4,109,739	+	yiiQ	b3920	0.17	-0.3
4,109,752	-	yiiQ	b3920	0.19	-0.4
4,109,759	+	yiiQ	b3920	0.20	+0.0
4,109,838	+	yiiQ	b3920	0.33	+0.4
4,109,838	+	yiiQ	b3920	0.33	-0.3
4,109,838	+	yiiQ	b3920	0.33	+0.1
4,109,846	-	yiiQ	b3920	0.35	+0.2
4,109,866	-	yiiQ	b3920	0.38	-1.1
4,109,963	+	yiiQ	b3920	0.54	+0.3
4,109,963	+	yiiQ	b3920	0.54	+0.9
4,110,004	+	yiiQ	b3920	0.61	+0.4
4,110,007	-	yiiQ	b3920	0.61	-0.3
4,110,007	-	yiiQ	b3920	0.61	-0.0
4,110,106	-	yiiQ	b3920	0.78	-0.1
4,110,116	-	yiiQ	b3920	0.80	+0.4
4,110,135	-	yiiQ	b3920	0.83	-0.2
4,110,135	-	yiiQ	b3920	0.83	+0.0
4,110,159	-	yiiQ	b3920	0.87	-0.3
4,110,177	+	yiiQ	b3920	0.90	+1.3
4,110,177	+	yiiQ	b3920	0.90	+0.0
4,110,185	-				+0.3
4,110,198	-				+0.4
4,110,232	-				+1.2
4,110,233	+				+0.3
4,110,342	+				+0.1
4,110,344	+				+0.4
4,110,375	+				+0.6
4,110,402	+	yiiR	b3921	0.15	-1.0
4,110,407	+	yiiR	b3921	0.16	+0.6
4,110,407	+	yiiR	b3921	0.16	-0.1
4,110,445	+	yiiR	b3921	0.24	+0.0
4,110,449	+	yiiR	b3921	0.25	-0.2
4,110,465	+	yiiR	b3921	0.29	-0.4
4,110,502	-	yiiR	b3921	0.37	+1.3