Strain Fitness in Escherichia coli BW25113 around b3908

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,097,881	+	rhaT	b3907	0.35	+0.4
4,097,918	+	rhaT	b3907	0.39	+0.3
4,097,918	+	rhaT	b3907	0.39	-0.2
4,097,944	-	rhaT	b3907	0.42	-0.8
4,098,110	-	rhaT	b3907	0.58	-0.4
4,098,132	+	rhaT	b3907	0.60	+0.3
4,098,132	+	rhaT	b3907	0.60	+0.1
4,098,273	-	rhaT	b3907	0.73	-1.7
4,098,279	-	rhaT	b3907	0.74	-0.0
4,098,279	-	rhaT	b3907	0.74	-0.3
4,098,282	+	rhaT	b3907	0.74	-0.0
4,098,339	-	rhaT	b3907	0.80	+0.5
4,098,339	-	rhaT	b3907	0.80	+1.7
4,098,488	+				-1.1
4,098,493	+				-1.3
4,098,513	-				+0.2
4,098,513	-				-2.2
4,098,538	+				-0.1
4,098,555	-				+0.3
4,098,776	-				-0.2
4,098,835	+				-1.2
4,098,838	-				-0.9
4,098,850	-				-0.7
4,098,857	-				-1.6
4,098,857	-				-1.1
4,098,864	-				-1.5
4,098,898	+	sodA	b3908	0.10	-0.7
4,098,925	-	sodA	b3908	0.15	-1.8
4,099,038	+	sodA	b3908	0.33	-2.3
4,099,092	-	sodA	b3908	0.42	-1.9
4,099,102	-	sodA	b3908	0.43	-1.6
4,099,114	-	sodA	b3908	0.45	-1.0
4,099,115	+	sodA	b3908	0.45	-1.8
4,099,122	-	sodA	b3908	0.47	-1.3
4,099,124	+	sodA	b3908	0.47	-1.8
4,099,160	+	sodA	b3908	0.53	-1.6
4,099,218	+	sodA	b3908	0.62	-0.7
4,099,237	-	sodA	b3908	0.65	-1.7
4,099,337	-	sodA	b3908	0.81	-1.4
4,099,394	-				-2.0
4,099,396	+				-1.9
4,099,396	-				-1.2
4,099,406	+				-1.7
4,099,479	+				+0.2
4,099,479	+				+1.1
4,099,485	-				-0.7
4,099,485	-				+0.2
4,099,485	-				+0.0
4,099,487	-				+0.5
4,099,669	+				-0.9
4,099,669	+				+0.0
4,099,671	-				-0.1
4,099,696	+				+0.1
4,099,732	-				+0.5
4,099,732	-				+0.8
4,099,748	-				+0.2
4,099,770	-				-0.4
4,099,770	-				+1.0
4,099,782	+				+0.1
4,099,782	+				+0.1
4,099,846	-	kdgT	b3909	0.14	+0.2
4,099,915	+	kdgT	b3909	0.21	-0.4
4,099,915	+	kdgT	b3909	0.21	+0.2
4,099,915	+	kdgT	b3909	0.21	-0.0
4,100,155	+	kdgT	b3909	0.45	-0.2
4,100,214	-	kdgT	b3909	0.51	-0.0
4,100,214	-	kdgT	b3909	0.51	-0.2
4,100,235	+	kdgT	b3909	0.53	+0.4
4,100,235	+	kdgT	b3909	0.53	-0.6
4,100,243	-	kdgT	b3909	0.54	+0.0
4,100,243	-	kdgT	b3909	0.54	+0.9