Strain Fitness in Escherichia coli BW25113 around b3288

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
3,431,373	+	smf	b4473	0.81	-0.6
3,431,376	-	smf	b4473	0.82	+0.2
3,431,415	-	smf	b4473	0.85	-0.6
3,431,415	-	smf	b4473	0.85	+0.1
3,431,448	+	smf	b4473	0.88	+0.3
3,431,448	+	smf	b4473	0.88	-0.1
3,431,455	-	smf	b4473	0.89	-0.1
3,431,455	-	smf	b4473	0.89	-0.9
3,431,468	+	smf	b4473	0.90	-0.1
3,431,474	-				+0.3
3,431,482	+				-0.2
3,431,509	+				-0.4
3,431,512	+				+0.3
3,431,517	+				+0.5
3,431,527	-				+0.1
3,431,578	+				+0.2
3,431,666	-				+0.1
3,431,697	+				+0.3
3,431,697	+				+0.1
3,432,172	+				-2.6
3,432,204	+				-1.5
3,432,204	+				-1.3
3,432,238	+				+0.1
3,433,170	+				-0.6
3,433,177	+				+0.5
3,433,178	+				-0.0
3,433,186	-				+0.6
3,433,186	-				-0.9
3,433,193	+				+0.4
3,433,193	+				-0.7
3,433,218	+				-0.4
3,433,260	-				-0.5
3,433,293	+				+0.9
3,433,374	+	rsmB	b3289	0.11	+0.8
3,433,374	+	rsmB	b3289	0.11	-0.6
3,433,374	+	rsmB	b3289	0.11	+0.3
3,433,379	-	rsmB	b3289	0.12	-0.5
3,433,384	-	rsmB	b3289	0.12	-0.7
3,433,392	-	rsmB	b3289	0.13	+0.8
3,433,393	+	rsmB	b3289	0.13	+0.6
3,433,397	+	rsmB	b3289	0.13	+0.3
3,433,397	+	rsmB	b3289	0.13	+0.4
3,433,397	+	rsmB	b3289	0.13	-0.2
3,433,397	+	rsmB	b3289	0.13	-0.6
3,433,397	+	rsmB	b3289	0.13	+0.4
3,433,397	+	rsmB	b3289	0.13	-0.9
3,433,421	-	rsmB	b3289	0.15	-1.9
3,433,421	-	rsmB	b3289	0.15	+1.0
3,433,440	-	rsmB	b3289	0.16	-0.7
3,433,447	+	rsmB	b3289	0.17	+1.2
3,433,464	+	rsmB	b3289	0.18	+0.4
3,433,466	-	rsmB	b3289	0.18	-0.6
3,433,472	-	rsmB	b3289	0.19	-0.3
3,433,497	+	rsmB	b3289	0.21	+0.1
3,433,504	+	rsmB	b3289	0.21	+0.3
3,433,511	-	rsmB	b3289	0.22	-0.4
3,433,518	-	rsmB	b3289	0.22	+0.4
3,433,523	-	rsmB	b3289	0.23	+1.1
3,433,523	-	rsmB	b3289	0.23	+0.8
3,433,525	+	rsmB	b3289	0.23	+0.4
3,433,525	+	rsmB	b3289	0.23	+0.9
3,433,567	+	rsmB	b3289	0.26	+0.4
3,433,589	+	rsmB	b3289	0.28	+0.5
3,433,629	-	rsmB	b3289	0.31	-0.2
3,433,665	+	rsmB	b3289	0.34	+0.4
3,433,665	+	rsmB	b3289	0.34	+1.3
3,433,665	+	rsmB	b3289	0.34	-0.2
3,433,671	-	rsmB	b3289	0.34	-1.0
3,433,671	-	rsmB	b3289	0.34	-1.3
3,433,673	-	rsmB	b3289	0.34	-0.0
3,433,698	+	rsmB	b3289	0.36	+0.9
3,433,706	-	rsmB	b3289	0.37	-0.7
3,433,706	-	rsmB	b3289	0.37	+0.7
3,433,706	-	rsmB	b3289	0.37	+0.4
3,433,758	+	rsmB	b3289	0.41	+0.2
3,433,837	+	rsmB	b3289	0.47	+0.2
3,433,843	+	rsmB	b3289	0.48	-0.2
3,433,843	+	rsmB	b3289	0.48	+0.8
3,433,845	-	rsmB	b3289	0.48	-0.6
3,433,845	-	rsmB	b3289	0.48	-0.6
3,433,851	+	rsmB	b3289	0.48	+0.4
3,433,859	-	rsmB	b3289	0.49	-0.2
3,433,864	-	rsmB	b3289	0.49	-0.5
3,433,864	-	rsmB	b3289	0.49	-0.7
3,433,864	-	rsmB	b3289	0.49	-0.1
3,433,877	+	rsmB	b3289	0.50	+0.6
3,433,936	+	rsmB	b3289	0.55	-0.5
3,433,939	-	rsmB	b3289	0.55	-0.9
3,433,944	-	rsmB	b3289	0.55	+0.2
3,433,953	-	rsmB	b3289	0.56	+0.6
3,434,019	+	rsmB	b3289	0.61	-0.0
3,434,027	-	rsmB	b3289	0.62	+1.2
3,434,036	+	rsmB	b3289	0.63	+0.5
3,434,071	-	rsmB	b3289	0.65	-0.4
3,434,071	-	rsmB	b3289	0.65	+0.2
3,434,112	-	rsmB	b3289	0.68	+0.1
3,434,134	-				-0.4
3,434,141	-	rsmB	b3289	0.71	-0.6
3,434,141	-	rsmB	b3289	0.71	+0.4
3,434,147	-	rsmB	b3289	0.71	-0.0
3,434,147	-	rsmB	b3289	0.71	-0.6
3,434,150	+	rsmB	b3289	0.71	+0.1
3,434,158	-	rsmB	b3289	0.72	-0.7