Strain Fitness in Escherichia coli BW25113 around b2913

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
3,054,348	+	ygfA	b2912	0.15	-1.0
3,054,388	-	ygfA	b2912	0.23	-1.6
3,054,480	-	ygfA	b2912	0.40	-0.9
3,054,480	-	ygfA	b2912	0.40	-0.9
3,054,524	+	ygfA	b2912	0.48	-0.9
3,054,532	-	ygfA	b2912	0.49	-1.8
3,054,578	+	ygfA	b2912	0.57	+0.1
3,054,696	-	ygfA	b2912	0.79	+0.3
3,054,704	+	ygfA	b2912	0.80	+0.7
3,054,704	+	ygfA	b2912	0.80	+0.4
3,054,711	+	ygfA	b2912	0.82	+0.0
3,054,711	+	ygfA	b2912	0.82	-1.2
3,054,788	-				-0.1
3,054,897	+	rygC	b4446	0.19	+0.6
3,054,946	-				-0.2
3,054,946	-				-0.7
3,055,023	-				+2.6
3,055,023	-				-0.3
3,055,280	-				-4.0
3,055,352	+	serA	b2913	0.12	-3.0
3,055,352	+	serA	b2913	0.12	-2.9
3,055,437	-	serA	b2913	0.19	-5.2
3,055,535	-	serA	b2913	0.27	-6.0
3,055,611	+	serA	b2913	0.33	-2.3
3,055,611	+	serA	b2913	0.33	-2.4
3,055,642	-	serA	b2913	0.36	-3.4
3,055,674	-	serA	b2913	0.38	-5.8
3,055,678	+	serA	b2913	0.39	-1.8
3,055,678	+	serA	b2913	0.39	-2.8
3,055,678	+	serA	b2913	0.39	-4.2
3,055,708	+	serA	b2913	0.41	-3.8
3,055,745	+	serA	b2913	0.44	-3.3
3,055,745	+	serA	b2913	0.44	-1.4
3,055,749	-	serA	b2913	0.45	-4.5
3,055,749	-	serA	b2913	0.45	-3.7
3,055,802	-	serA	b2913	0.49	-4.6
3,055,843	-	serA	b2913	0.52	-4.8
3,055,850	+	serA	b2913	0.53	-3.3
3,055,869	-	serA	b2913	0.54	-6.6
3,056,013	+	serA	b2913	0.66	-5.6
3,056,118	+	serA	b2913	0.74	-5.9
3,056,118	-	serA	b2913	0.74	-4.2
3,056,132	-	serA	b2913	0.76	-2.4
3,056,132	-	serA	b2913	0.76	-4.8
3,056,177	+	serA	b2913	0.79	-3.7
3,056,177	+	serA	b2913	0.79	-3.7
3,056,253	-	serA	b2913	0.85	-4.1
3,056,345	+				-4.9
3,056,388	-				-5.4
3,056,487	-				-0.1
3,056,551	-				-1.3
3,056,578	+				-0.2
3,056,600	-				-1.0
3,056,617	+				+0.2
3,057,409	-				-0.4