Strain Fitness in Escherichia coli BW25113 around b2827

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
2,961,469	+	ppdB	b2825	0.52	+1.4
2,961,469	+	ppdB	b2825	0.52	+0.6
2,961,483	-	ppdB	b2825	0.55	+1.3
2,961,483	-	ppdB	b2825	0.55	-0.2
2,961,493	-	ppdB	b2825	0.56	-0.6
2,961,493	-	ppdB	b2825	0.56	-0.5
2,961,518	+	ppdB	b2825	0.61	-0.6
2,961,529	-	ppdB	b2825	0.63	-0.1
2,961,529	-	ppdB	b2825	0.63	-0.0
2,961,543	-	ppdB	b2825	0.65	-0.5
2,961,543	-	ppdB	b2825	0.65	-0.3
2,961,543	-	ppdB	b2825	0.65	-0.0
2,961,664	+	ppdB	b2825	0.87	-2.1
2,961,664	+	ppdB	b2825	0.87	-0.3
2,961,794	+	ppdA	b2826	0.14	+0.3
2,961,794	+	ppdA	b2826	0.14	-0.3
2,961,832	-	ppdA	b2826	0.22	-0.4
2,961,832	-	ppdA	b2826	0.22	-0.3
2,961,852	-	ppdA	b2826	0.26	-0.3
2,961,875	+	ppdA	b2826	0.31	+1.0
2,961,875	+	ppdA	b2826	0.31	-1.1
2,961,906	+	ppdA	b2826	0.38	-0.3
2,961,918	+	ppdA	b2826	0.40	-0.1
2,961,943	+	ppdA	b2826	0.45	-0.1
2,961,943	+	ppdA	b2826	0.45	+0.0
2,961,958	+	ppdA	b2826	0.49	+0.4
2,961,958	+	ppdA	b2826	0.49	-0.5
2,961,963	+	ppdA	b2826	0.50	+0.3
2,962,113	+	ppdA	b2826	0.82	-0.4
2,962,122	-	ppdA	b2826	0.83	+0.4
2,962,130	+	ppdA	b2826	0.85	+0.1
2,962,130	+	ppdA	b2826	0.85	-0.2
2,962,149	-	ppdA	b2826	0.89	-0.3
2,962,149	-	ppdA	b2826	0.89	-0.3
2,962,151	+	ppdA	b2826	0.90	-0.2
2,962,173	-				-0.3
2,962,175	+				-0.1
2,962,175	+				-0.2
2,962,175	+				-0.5
2,962,175	+				+0.3
2,962,183	-				+0.2
2,962,215	-				-0.2
2,962,271	+				-0.2
2,962,281	+				+0.2
2,962,281	+				+0.2
2,962,289	-				-0.3
2,962,289	-				-0.2
2,963,201	-				-0.3
2,963,239	-				-0.2
2,964,140	-				+1.1