Strain Fitness in Escherichia coli BW25113 around b2707

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
2,826,210	+	srlD	b2705	0.58	+0.4
2,826,210	+	srlD	b2705	0.58	+0.5
2,826,215	+	srlD	b2705	0.58	+0.2
2,826,218	-	srlD	b2705	0.59	+0.7
2,826,218	-	srlD	b2705	0.59	+0.5
2,826,245	+	srlD	b2705	0.62	-0.4
2,826,318	-	srlD	b2705	0.72	-0.5
2,826,397	+	srlD	b2705	0.82	+0.7
2,826,397	+	srlD	b2705	0.82	+0.2
2,826,397	+	srlD	b2705	0.82	+0.4
2,826,397	+	srlD	b2705	0.82	+0.1
2,826,474	+				-0.1
2,826,474	+				-0.6
2,826,482	-				+0.2
2,826,490	-				+0.0
2,826,490	-				-0.1
2,826,613	-				-0.4
2,826,613	-				-1.5
2,826,613	-				-0.1
2,826,646	-				+0.1
2,826,771	-	gutM	b2706	0.36	+0.3
2,826,876	-	gutM	b2706	0.65	+1.4
2,826,932	+	gutM	b2706	0.80	+0.3
2,826,963	-	gutM	b2706	0.89	-0.4
2,827,166	-	srlR	b2707	0.13	-1.2
2,827,166	-	srlR	b2707	0.13	-1.8
2,827,191	-	srlR	b2707	0.16	-2.1
2,827,191	-	srlR	b2707	0.16	-0.6
2,827,193	+	srlR	b2707	0.16	-1.1
2,827,193	+	srlR	b2707	0.16	-0.3
2,827,201	-	srlR	b2707	0.17	-2.6
2,827,298	+	srlR	b2707	0.30	-1.5
2,827,368	+	srlR	b2707	0.39	-1.4
2,827,425	+	srlR	b2707	0.46	-3.1
2,827,431	+	srlR	b2707	0.47	-2.4
2,827,481	+	srlR	b2707	0.53	-3.7
2,827,483	-	srlR	b2707	0.53	-0.9
2,827,549	+	srlR	b2707	0.62	-0.7
2,827,619	+	srlR	b2707	0.71	-1.9
2,827,619	+	srlR	b2707	0.71	-1.5
2,827,893	-				+0.3
2,828,144	+	gutQ	b2708	0.32	+0.2
2,828,242	-	gutQ	b2708	0.42	-0.4
2,828,313	-	gutQ	b2708	0.49	-0.4
2,828,314	-	gutQ	b2708	0.50	+0.3
2,828,394	-	gutQ	b2708	0.58	+0.4
2,828,394	-	gutQ	b2708	0.58	-0.1
2,828,394	-	gutQ	b2708	0.58	+0.6
2,828,405	-	gutQ	b2708	0.59	+0.2