Strain Fitness in Escherichia coli BW25113 around b2383

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
2,499,049	+	ypdB	b2381	0.88	+0.2
2,499,049	+	ypdB	b2381	0.88	+0.1
2,499,057	+	ypdB	b2381	0.89	+0.4
2,499,057	+	ypdB	b2381	0.89	+0.3
2,499,057	-	ypdB	b2381	0.89	+0.0
2,499,059	-	ypdB	b2381	0.89	-0.4
2,499,097	-				+0.0
2,499,272	-	ypdC	b2382	0.14	+0.4
2,499,272	-	ypdC	b2382	0.14	-0.0
2,499,301	+	ypdC	b2382	0.17	-0.4
2,499,443	-	ypdC	b2382	0.34	+0.0
2,499,454	+	ypdC	b2382	0.35	+0.4
2,499,459	+	ypdC	b2382	0.36	+0.5
2,499,472	-	ypdC	b2382	0.37	+0.7
2,499,472	-	ypdC	b2382	0.37	-0.0
2,499,500	-	ypdC	b2382	0.41	-0.5
2,499,507	-	ypdC	b2382	0.41	-0.2
2,499,579	-	ypdC	b2382	0.50	+0.3
2,499,585	-	ypdC	b2382	0.50	-0.1
2,499,652	+	ypdC	b2382	0.58	+0.5
2,499,697	+	ypdC	b2382	0.64	+0.6
2,499,745	-	ypdC	b2382	0.69	-0.2
2,499,811	+	ypdC	b2382	0.77	+0.0
2,499,819	-	ypdC	b2382	0.78	-0.3
2,499,980	+				-0.2
2,499,980	+				+0.3
2,499,982	+				+0.3
2,499,982	+				+0.5
2,500,240	+				-0.0
2,500,254	+				+0.6
2,500,254	+				-0.2
2,500,351	-	ypdD	b2383	0.14	+0.1
2,500,561	-	ypdD	b2383	0.22	+0.3
2,500,561	-	ypdD	b2383	0.22	+0.2
2,500,678	+	ypdD	b2383	0.27	+0.0
2,500,678	+	ypdD	b2383	0.27	+0.2
2,500,740	-	ypdD	b2383	0.29	-0.6
2,500,785	-	ypdD	b2383	0.31	+0.0
2,500,785	-	ypdD	b2383	0.31	+1.0
2,500,793	+	ypdD	b2383	0.31	-0.4
2,500,793	+	ypdD	b2383	0.31	-0.0
2,500,850	+	ypdD	b2383	0.34	-0.1
2,500,850	+	ypdD	b2383	0.34	+0.2
2,500,860	+	ypdD	b2383	0.34	-0.2
2,500,907	-	ypdD	b2383	0.36	-1.3
2,500,914	+	ypdD	b2383	0.36	-0.6
2,501,004	+	ypdD	b2383	0.40	-0.0
2,501,020	-	ypdD	b2383	0.40	-0.3
2,501,074	-	ypdD	b2383	0.43	-0.9
2,501,074	-	ypdD	b2383	0.43	-0.2
2,501,079	-	ypdD	b2383	0.43	-0.1
2,501,103	-	ypdD	b2383	0.44	+0.0
2,501,276	+	ypdD	b2383	0.51	+0.5
2,501,281	-	ypdD	b2383	0.51	-0.2
2,501,299	-	ypdD	b2383	0.52	-0.0
2,501,310	+	ypdD	b2383	0.52	-0.8
2,501,329	+	ypdD	b2383	0.53	+0.1
2,501,329	+	ypdD	b2383	0.53	-0.4
2,501,400	-	ypdD	b2383	0.56	+0.2
2,501,422	-	ypdD	b2383	0.56	+0.4
2,501,504	+	ypdD	b2383	0.60	-0.1
2,501,509	+	ypdD	b2383	0.60	-0.1
2,501,546	-	ypdD	b2383	0.61	+0.1
2,501,546	-	ypdD	b2383	0.61	-0.2
2,501,560	-	ypdD	b2383	0.62	+0.2
2,501,613	+	ypdD	b2383	0.64	-0.4
2,501,613	+	ypdD	b2383	0.64	+0.5
2,501,641	+	ypdD	b2383	0.65	-0.2
2,501,703	-	ypdD	b2383	0.68	+0.8
2,501,854	-	ypdD	b2383	0.74	-0.0
2,501,854	-	ypdD	b2383	0.74	-0.1
2,501,859	+	ypdD	b2383	0.74	+0.0
2,501,972	+	ypdD	b2383	0.79	+1.1
2,501,972	+	ypdD	b2383	0.79	-0.4
2,502,101	+	ypdD	b2383	0.84	-0.4
2,502,288	+				-0.3
2,502,354	+				-0.6
2,502,656	-	ypdE	b2384	0.12	+0.4
2,502,774	+	ypdE	b2384	0.23	-0.0
2,502,774	+	ypdE	b2384	0.23	+1.1
2,503,000	+	ypdE	b2384	0.45	+0.2
2,503,000	+	ypdE	b2384	0.45	+0.4
2,503,120	+	ypdE	b2384	0.57	-0.5
2,503,260	+	ypdE	b2384	0.70	-0.3
2,503,260	+	ypdE	b2384	0.70	+0.2
2,503,268	-	ypdE	b2384	0.71	-0.0
2,503,268	-	ypdE	b2384	0.71	-0.3
2,503,268	-	ypdE	b2384	0.71	-0.3
2,503,386	-	ypdE	b2384	0.82	-0.2
2,503,386	-	ypdE	b2384	0.82	+0.2
2,503,409	-	ypdE	b2384	0.84	+0.4