Strain Fitness in Escherichia coli BW25113 around b2124

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
2,208,766	+	yehQ	b2122	0.82	+0.7
2,208,861	+	yehQ	b2122	0.87	+0.6
2,208,861	+	yehQ	b2122	0.87	-1.9
2,208,866	+	yehQ	b2122	0.87	-0.4
2,208,869	-	yehQ	b2122	0.87	-0.3
2,208,891	+	yehQ	b2122	0.88	-2.4
2,208,905	+	yehQ	b2122	0.89	+0.1
2,208,905	+	yehQ	b2122	0.89	-0.3
2,208,913	-	yehQ	b2122	0.90	+0.1
2,208,924	-				-0.0
2,208,932	-				+0.2
2,208,940	-				+0.8
2,208,943	-				-0.1
2,208,943	-				-0.4
2,208,950	+				+0.4
2,208,960	+				-0.8
2,208,980	+				+0.0
2,208,980	+				-0.1
2,208,980	+				-0.0
2,209,024	-				-0.8
2,209,063	+				-0.1
2,209,113	-				-0.0
2,209,125	-				+0.2
2,209,125	-				-0.8
2,209,154	+				+0.2
2,209,154	+				+0.4
2,209,157	-				+0.5
2,209,157	-				-0.2
2,209,162	-				+1.0
2,209,164	+				+0.1
2,209,164	+				-0.4
2,209,172	-				+0.0
2,209,172	-				-0.0
2,209,172	-				-0.4
2,209,172	-				-0.7
2,209,176	+				+0.4
2,209,184	-				+0.0
2,209,184	-				-1.1
2,209,187	+				+0.2
2,209,187	+				+0.2
2,209,189	+				+0.1
2,209,195	-				+0.1
2,209,195	-				+1.3
2,209,195	-				-0.4
2,209,206	-				-0.1
2,209,208	+				-0.2
2,209,352	-	yehR	b2123	0.23	-1.3
2,209,352	-	yehR	b2123	0.23	+0.4
2,209,377	+	yehR	b2123	0.28	-0.6
2,209,377	+	yehR	b2123	0.28	+0.4
2,209,390	-	yehR	b2123	0.31	+0.1
2,209,396	+	yehR	b2123	0.32	+0.5
2,209,449	-	yehR	b2123	0.44	-0.4
2,209,962	-	yehS	b2124	0.45	-0.5
2,209,962	-	yehS	b2124	0.45	+0.2
2,209,964	-	yehS	b2124	0.46	-0.2
2,209,966	-	yehS	b2124	0.46	-0.0
2,209,966	-	yehS	b2124	0.46	-0.7
2,210,041	-	yehS	b2124	0.62	-0.1
2,210,106	-	yehS	b2124	0.76	+5.1
2,210,106	-	yehS	b2124	0.76	+0.1
2,210,138	-	yehS	b2124	0.83	-0.0
2,210,161	+	yehS	b2124	0.88	-0.7
2,210,185	+				+0.5
2,210,193	-				-0.3
2,210,203	-				-0.2
2,210,313	-				+0.0
2,210,408	-	yehT	b2125	0.20	-0.8
2,210,411	-	yehT	b2125	0.20	-1.8
2,210,492	+	yehT	b2125	0.32	-0.5
2,210,492	+	yehT	b2125	0.32	+0.3
2,210,498	-	yehT	b2125	0.32	-0.1
2,210,502	+	yehT	b2125	0.33	-0.4
2,210,695	-	yehT	b2125	0.60	+0.2
2,210,695	-	yehT	b2125	0.60	-0.2
2,210,715	+	yehT	b2125	0.62	+0.7
2,210,715	+	yehT	b2125	0.62	-1.1
2,210,858	-	yehT	b2125	0.82	+0.3
2,210,858	-	yehT	b2125	0.82	+0.1
2,210,936	+				+0.4
2,210,954	-				-0.9
2,210,962	-				-0.0
2,210,962	-				+0.0
2,211,049	-				-0.1
2,211,051	+				-0.7
2,211,130	-				-0.1
2,211,130	-				-0.5
2,211,207	-	yehU	b2126	0.13	+0.0
2,211,207	-	yehU	b2126	0.13	-0.6
2,211,218	-	yehU	b2126	0.14	+0.5