Experiment: Ying_Nucleobase14 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiB and ybiC are separated by 140 nucleotides ybiC and ybiJ are separated by 228 nucleotides ybiJ and ybiI are separated by 264 nucleotides
b0800: ybiB - hypothetical protein (NCBI), at 834,471 to 835,433
ybiB
b0801: ybiC - predicted dehydrogenase (NCBI), at 835,574 to 836,659
ybiC
b0802: ybiJ - hypothetical protein (NCBI), at 836,888 to 837,148
ybiJ
b0803: ybiI - hypothetical protein (NCBI), at 837,413 to 837,679
ybiI
Position (kb)
835
836
837 Strain fitness (log2 ratio)
-1
0
1
2 at 834.642 kb on + strand, within ybiB at 834.642 kb on + strand, within ybiB at 834.734 kb on - strand, within ybiB at 834.799 kb on + strand, within ybiB at 835.009 kb on - strand, within ybiB at 835.090 kb on + strand, within ybiB at 835.163 kb on + strand, within ybiB at 835.179 kb on - strand, within ybiB at 835.207 kb on + strand, within ybiB at 835.207 kb on + strand, within ybiB at 835.239 kb on - strand, within ybiB at 835.239 kb on - strand, within ybiB at 835.294 kb on - strand, within ybiB at 835.454 kb on + strand at 835.607 kb on + strand at 835.607 kb on + strand at 835.652 kb on - strand at 835.747 kb on + strand, within ybiC at 835.801 kb on + strand, within ybiC at 835.801 kb on + strand, within ybiC at 835.836 kb on + strand, within ybiC at 835.836 kb on + strand, within ybiC at 835.971 kb on - strand, within ybiC at 836.021 kb on - strand, within ybiC at 836.278 kb on + strand, within ybiC at 836.278 kb on + strand, within ybiC at 836.362 kb on - strand, within ybiC at 836.383 kb on - strand, within ybiC at 836.634 kb on - strand at 836.645 kb on + strand at 836.723 kb on - strand at 836.768 kb on - strand at 836.787 kb on - strand at 836.938 kb on + strand, within ybiJ at 837.079 kb on - strand, within ybiJ at 837.104 kb on + strand, within ybiJ at 837.196 kb on - strand at 837.320 kb on + strand at 837.320 kb on + strand at 837.320 kb on + strand at 837.320 kb on + strand at 837.389 kb on + strand at 837.406 kb on + strand at 837.438 kb on - strand at 837.438 kb on - strand at 837.446 kb on + strand, within ybiI at 837.550 kb on - strand, within ybiI at 837.567 kb on - strand, within ybiI at 837.576 kb on - strand, within ybiI at 837.630 kb on + strand, within ybiI at 837.638 kb on - strand, within ybiI
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3 remove 834,642 + ybiB b0800 0.18 +1.1 834,642 + ybiB b0800 0.18 +0.3 834,734 - ybiB b0800 0.27 +0.0 834,799 + ybiB b0800 0.34 +0.1 835,009 - ybiB b0800 0.56 -0.0 835,090 + ybiB b0800 0.64 +0.4 835,163 + ybiB b0800 0.72 +1.4 835,179 - ybiB b0800 0.74 -0.5 835,207 + ybiB b0800 0.76 +0.1 835,207 + ybiB b0800 0.76 -0.3 835,239 - ybiB b0800 0.80 +0.2 835,239 - ybiB b0800 0.80 +0.2 835,294 - ybiB b0800 0.85 -0.3 835,454 + -0.2 835,607 + -0.8 835,607 + -0.2 835,652 - -0.2 835,747 + ybiC b0801 0.16 +0.4 835,801 + ybiC b0801 0.21 +0.4 835,801 + ybiC b0801 0.21 -0.3 835,836 + ybiC b0801 0.24 +0.3 835,836 + ybiC b0801 0.24 -0.2 835,971 - ybiC b0801 0.37 -0.0 836,021 - ybiC b0801 0.41 -0.2 836,278 + ybiC b0801 0.65 -0.0 836,278 + ybiC b0801 0.65 +0.1 836,362 - ybiC b0801 0.73 +0.1 836,383 - ybiC b0801 0.74 +1.1 836,634 - -0.1 836,645 + +0.0 836,723 - +0.4 836,768 - +1.1 836,787 - +0.3 836,938 + ybiJ b0802 0.19 -0.0 837,079 - ybiJ b0802 0.73 -0.2 837,104 + ybiJ b0802 0.83 -0.8 837,196 - +1.3 837,320 + +0.3 837,320 + +2.0 837,320 + +0.4 837,320 + +0.2 837,389 + +1.1 837,406 + -1.1 837,438 - -0.2 837,438 - +0.2 837,446 + ybiI b0803 0.12 +0.1 837,550 - ybiI b0803 0.51 +0.1 837,567 - ybiI b0803 0.58 +1.7 837,576 - ybiI b0803 0.61 -0.1 837,630 + ybiI b0803 0.81 -1.6 837,638 - ybiI b0803 0.84 -0.1
Or see this region's nucleotide sequence