Experiment: Ying_Nucleobase14 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhI and ybhJ are separated by 182 nucleotides ybhJ and ybhC are separated by 233 nucleotides
b0770: ybhI - predicted transporter (NCBI), at 801,110 to 802,543
ybhI
b0771: ybhJ - putative enzyme (VIMSS), at 802,726 to 804,987
ybhJ
b0772: ybhC - predicted pectinesterase (NCBI), at 805,221 to 806,504
ybhC
Position (kb) 802
803
804
805 Strain fitness (log2 ratio) -1
0
1
2
3 at 801.765 kb on + strand, within ybhI at 801.767 kb on + strand, within ybhI at 801.771 kb on - strand, within ybhI at 801.794 kb on - strand, within ybhI at 801.806 kb on - strand, within ybhI at 801.873 kb on + strand, within ybhI at 801.893 kb on + strand, within ybhI at 801.893 kb on + strand, within ybhI at 801.961 kb on - strand, within ybhI at 801.976 kb on + strand, within ybhI at 801.976 kb on + strand, within ybhI at 801.985 kb on - strand, within ybhI at 801.994 kb on + strand, within ybhI at 802.026 kb on + strand, within ybhI at 802.026 kb on + strand, within ybhI at 802.036 kb on + strand, within ybhI at 802.112 kb on + strand, within ybhI at 802.118 kb on + strand, within ybhI at 802.152 kb on + strand, within ybhI at 802.153 kb on + strand, within ybhI at 802.180 kb on + strand, within ybhI at 802.184 kb on + strand, within ybhI at 802.190 kb on + strand, within ybhI at 802.190 kb on + strand, within ybhI at 802.195 kb on + strand, within ybhI at 802.263 kb on - strand, within ybhI at 802.266 kb on + strand, within ybhI at 802.272 kb on - strand, within ybhI at 802.272 kb on - strand, within ybhI at 802.273 kb on - strand, within ybhI at 802.273 kb on - strand, within ybhI at 802.275 kb on + strand, within ybhI at 802.275 kb on + strand, within ybhI at 802.282 kb on + strand, within ybhI at 802.309 kb on + strand, within ybhI at 802.309 kb on + strand, within ybhI at 802.319 kb on - strand, within ybhI at 802.322 kb on - strand, within ybhI at 802.328 kb on + strand, within ybhI at 802.338 kb on + strand, within ybhI at 802.348 kb on + strand, within ybhI at 802.348 kb on + strand, within ybhI at 802.348 kb on + strand, within ybhI at 802.354 kb on + strand, within ybhI at 802.356 kb on - strand, within ybhI at 802.360 kb on + strand, within ybhI at 802.362 kb on + strand, within ybhI at 802.362 kb on + strand, within ybhI at 802.368 kb on - strand, within ybhI at 802.368 kb on - strand, within ybhI at 802.369 kb on - strand, within ybhI at 802.382 kb on + strand, within ybhI at 802.382 kb on - strand, within ybhI at 802.384 kb on + strand, within ybhI at 802.384 kb on - strand, within ybhI at 802.390 kb on - strand, within ybhI at 802.390 kb on - strand, within ybhI at 802.410 kb on + strand at 802.418 kb on - strand at 802.420 kb on + strand at 802.421 kb on + strand at 802.440 kb on + strand at 802.455 kb on + strand at 802.455 kb on + strand at 802.455 kb on + strand at 802.455 kb on + strand at 802.455 kb on + strand at 802.463 kb on - strand at 802.469 kb on + strand at 802.484 kb on + strand at 802.488 kb on + strand at 802.494 kb on + strand at 802.494 kb on + strand at 802.502 kb on + strand at 802.507 kb on + strand at 802.507 kb on + strand at 802.512 kb on + strand at 802.515 kb on - strand at 802.525 kb on + strand at 802.538 kb on + strand at 802.576 kb on - strand at 802.595 kb on - strand at 802.609 kb on + strand at 802.634 kb on + strand at 802.634 kb on + strand at 802.665 kb on + strand at 802.702 kb on + strand at 802.702 kb on + strand at 802.702 kb on - strand at 802.702 kb on - strand at 802.709 kb on + strand at 802.717 kb on - strand at 802.719 kb on - strand at 802.844 kb on - strand at 802.849 kb on - strand at 802.849 kb on - strand at 802.849 kb on - strand at 802.849 kb on - strand at 802.932 kb on - strand at 802.944 kb on - strand at 802.944 kb on - strand at 802.944 kb on - strand at 802.946 kb on + strand at 802.946 kb on - strand at 802.946 kb on - strand at 802.948 kb on + strand at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.956 kb on - strand, within ybhJ at 802.963 kb on - strand, within ybhJ at 802.963 kb on - strand, within ybhJ at 802.968 kb on - strand, within ybhJ at 802.968 kb on - strand, within ybhJ at 802.969 kb on - strand, within ybhJ at 802.969 kb on - strand, within ybhJ at 802.969 kb on - strand, within ybhJ at 802.969 kb on - strand, within ybhJ at 802.982 kb on + strand, within ybhJ at 802.982 kb on + strand, within ybhJ at 802.986 kb on - strand, within ybhJ at 802.987 kb on + strand, within ybhJ at 802.990 kb on - strand, within ybhJ at 802.990 kb on - strand, within ybhJ at 802.990 kb on - strand, within ybhJ at 802.992 kb on + strand, within ybhJ at 803.005 kb on + strand, within ybhJ at 803.009 kb on - strand, within ybhJ at 803.009 kb on - strand, within ybhJ at 803.013 kb on - strand, within ybhJ at 803.013 kb on - strand, within ybhJ at 803.019 kb on - strand, within ybhJ at 803.026 kb on - strand, within ybhJ at 803.027 kb on + strand, within ybhJ at 803.028 kb on - strand, within ybhJ at 803.030 kb on - strand, within ybhJ at 803.114 kb on + strand, within ybhJ at 803.129 kb on - strand, within ybhJ at 803.165 kb on + strand, within ybhJ at 803.165 kb on + strand, within ybhJ at 803.173 kb on + strand, within ybhJ at 803.173 kb on - strand, within ybhJ at 803.181 kb on - strand, within ybhJ at 803.209 kb on - strand, within ybhJ at 803.209 kb on - strand, within ybhJ at 803.217 kb on + strand, within ybhJ at 803.217 kb on + strand, within ybhJ at 803.230 kb on - strand, within ybhJ at 803.297 kb on - strand, within ybhJ at 803.336 kb on - strand, within ybhJ at 803.336 kb on - strand, within ybhJ at 803.394 kb on + strand, within ybhJ at 803.394 kb on + strand, within ybhJ at 803.560 kb on + strand, within ybhJ at 803.579 kb on - strand, within ybhJ at 803.586 kb on + strand, within ybhJ at 803.735 kb on - strand, within ybhJ at 803.735 kb on - strand, within ybhJ at 804.094 kb on - strand, within ybhJ at 804.101 kb on - strand, within ybhJ at 804.101 kb on - strand, within ybhJ at 804.104 kb on - strand, within ybhJ at 804.197 kb on + strand, within ybhJ at 804.305 kb on + strand, within ybhJ at 804.305 kb on + strand, within ybhJ at 804.584 kb on + strand, within ybhJ at 804.584 kb on + strand, within ybhJ at 804.618 kb on + strand, within ybhJ at 804.618 kb on + strand, within ybhJ at 804.626 kb on - strand, within ybhJ at 804.739 kb on - strand, within ybhJ at 804.793 kb on - strand at 804.793 kb on - strand at 804.861 kb on - strand at 804.911 kb on - strand at 804.911 kb on - strand at 804.928 kb on - strand at 805.001 kb on + strand at 805.026 kb on + strand at 805.271 kb on - strand at 805.319 kb on - strand at 805.334 kb on - strand at 805.441 kb on - strand, within ybhC at 805.585 kb on + strand, within ybhC at 805.674 kb on - strand, within ybhC at 805.683 kb on - strand, within ybhC at 805.726 kb on - strand, within ybhC at 805.736 kb on - strand, within ybhC at 805.757 kb on - strand, within ybhC at 805.757 kb on - strand, within ybhC at 805.759 kb on - strand, within ybhC at 805.774 kb on + strand, within ybhC at 805.774 kb on + strand, within ybhC at 805.782 kb on - strand, within ybhC at 805.782 kb on - strand, within ybhC at 805.801 kb on + strand, within ybhC at 805.920 kb on - strand, within ybhC at 805.935 kb on - strand, within ybhC at 805.956 kb on + strand, within ybhC at 805.956 kb on + strand, within ybhC
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3 remove 801,765 + ybhI b0770 0.46 -0.4 801,767 + ybhI b0770 0.46 -0.2 801,771 - ybhI b0770 0.46 -0.3 801,794 - ybhI b0770 0.48 +0.1 801,806 - ybhI b0770 0.49 +0.3 801,873 + ybhI b0770 0.53 +0.6 801,893 + ybhI b0770 0.55 -0.1 801,893 + ybhI b0770 0.55 +0.0 801,961 - ybhI b0770 0.59 -0.2 801,976 + ybhI b0770 0.60 -0.6 801,976 + ybhI b0770 0.60 -1.2 801,985 - ybhI b0770 0.61 +1.0 801,994 + ybhI b0770 0.62 +0.5 802,026 + ybhI b0770 0.64 -0.6 802,026 + ybhI b0770 0.64 -0.2 802,036 + ybhI b0770 0.65 -0.2 802,112 + ybhI b0770 0.70 +0.0 802,118 + ybhI b0770 0.70 +0.7 802,152 + ybhI b0770 0.73 -0.7 802,153 + ybhI b0770 0.73 -0.1 802,180 + ybhI b0770 0.75 -0.2 802,184 + ybhI b0770 0.75 -0.7 802,190 + ybhI b0770 0.75 +0.5 802,190 + ybhI b0770 0.75 +0.6 802,195 + ybhI b0770 0.76 +0.0 802,263 - ybhI b0770 0.80 -0.3 802,266 + ybhI b0770 0.81 +0.4 802,272 - ybhI b0770 0.81 +0.8 802,272 - ybhI b0770 0.81 -1.1 802,273 - ybhI b0770 0.81 +0.0 802,273 - ybhI b0770 0.81 +3.4 802,275 + ybhI b0770 0.81 -0.5 802,275 + ybhI b0770 0.81 +0.7 802,282 + ybhI b0770 0.82 +0.2 802,309 + ybhI b0770 0.84 -0.2 802,309 + ybhI b0770 0.84 +1.0 802,319 - ybhI b0770 0.84 +3.4 802,322 - ybhI b0770 0.85 +0.2 802,328 + ybhI b0770 0.85 -0.5 802,338 + ybhI b0770 0.86 -0.1 802,348 + ybhI b0770 0.86 -0.3 802,348 + ybhI b0770 0.86 +0.2 802,348 + ybhI b0770 0.86 -0.4 802,354 + ybhI b0770 0.87 +0.4 802,356 - ybhI b0770 0.87 +0.8 802,360 + ybhI b0770 0.87 +0.1 802,362 + ybhI b0770 0.87 -0.2 802,362 + ybhI b0770 0.87 +0.4 802,368 - ybhI b0770 0.88 +2.4 802,368 - ybhI b0770 0.88 +3.6 802,369 - ybhI b0770 0.88 +0.4 802,382 + ybhI b0770 0.89 +0.1 802,382 - ybhI b0770 0.89 +0.4 802,384 + ybhI b0770 0.89 -0.1 802,384 - ybhI b0770 0.89 -0.2 802,390 - ybhI b0770 0.89 +1.4 802,390 - ybhI b0770 0.89 +1.4 802,410 + -0.1 802,418 - -0.1 802,420 + -0.5 802,421 + +0.4 802,440 + +0.4 802,455 + -1.1 802,455 + +1.1 802,455 + +0.2 802,455 + -0.3 802,455 + -0.2 802,463 - +2.4 802,469 + +0.9 802,484 + -0.1 802,488 + +0.4 802,494 + +0.3 802,494 + +0.2 802,502 + +0.3 802,507 + +0.0 802,507 + -0.8 802,512 + +0.8 802,515 - -1.5 802,525 + -1.0 802,538 + +0.0 802,576 - +0.0 802,595 - +1.4 802,609 + +0.0 802,634 + +0.5 802,634 + +0.2 802,665 + +0.4 802,702 + +0.5 802,702 + -0.4 802,702 - -0.5 802,702 - +1.4 802,709 + -0.9 802,717 - +2.4 802,719 - +0.8 802,844 - +0.2 802,849 - -0.5 802,849 - +0.9 802,849 - +0.0 802,849 - +0.4 802,932 - -0.1 802,944 - -0.3 802,944 - +0.0 802,944 - -0.7 802,946 + -0.4 802,946 - +0.2 802,946 - +0.4 802,948 + +0.8 802,954 - ybhJ b0771 0.10 -0.2 802,954 - ybhJ b0771 0.10 -0.2 802,954 - ybhJ b0771 0.10 -0.2 802,954 - ybhJ b0771 0.10 -0.1 802,954 - ybhJ b0771 0.10 +0.4 802,954 - ybhJ b0771 0.10 -0.7 802,956 - ybhJ b0771 0.10 -0.4 802,963 - ybhJ b0771 0.10 +0.4 802,963 - ybhJ b0771 0.10 +0.4 802,968 - ybhJ b0771 0.11 -0.2 802,968 - ybhJ b0771 0.11 +0.2 802,969 - ybhJ b0771 0.11 -0.0 802,969 - ybhJ b0771 0.11 +0.2 802,969 - ybhJ b0771 0.11 +0.7 802,969 - ybhJ b0771 0.11 -0.6 802,982 + ybhJ b0771 0.11 -0.1 802,982 + ybhJ b0771 0.11 -0.0 802,986 - ybhJ b0771 0.11 -0.1 802,987 + ybhJ b0771 0.12 +0.2 802,990 - ybhJ b0771 0.12 +0.0 802,990 - ybhJ b0771 0.12 -0.0 802,990 - ybhJ b0771 0.12 +0.4 802,992 + ybhJ b0771 0.12 -0.0 803,005 + ybhJ b0771 0.12 +0.0 803,009 - ybhJ b0771 0.13 -0.0 803,009 - ybhJ b0771 0.13 +0.0 803,013 - ybhJ b0771 0.13 -0.0 803,013 - ybhJ b0771 0.13 -0.3 803,019 - ybhJ b0771 0.13 +0.8 803,026 - ybhJ b0771 0.13 -0.7 803,027 + ybhJ b0771 0.13 -0.0 803,028 - ybhJ b0771 0.13 -0.2 803,030 - ybhJ b0771 0.13 +0.0 803,114 + ybhJ b0771 0.17 +0.0 803,129 - ybhJ b0771 0.18 +0.2 803,165 + ybhJ b0771 0.19 +0.4 803,165 + ybhJ b0771 0.19 +0.7 803,173 + ybhJ b0771 0.20 -0.1 803,173 - ybhJ b0771 0.20 +0.2 803,181 - ybhJ b0771 0.20 +0.1 803,209 - ybhJ b0771 0.21 +0.0 803,209 - ybhJ b0771 0.21 +0.3 803,217 + ybhJ b0771 0.22 -0.2 803,217 + ybhJ b0771 0.22 +0.1 803,230 - ybhJ b0771 0.22 +0.2 803,297 - ybhJ b0771 0.25 +1.8 803,336 - ybhJ b0771 0.27 -1.0 803,336 - ybhJ b0771 0.27 +0.3 803,394 + ybhJ b0771 0.30 -0.1 803,394 + ybhJ b0771 0.30 +0.3 803,560 + ybhJ b0771 0.37 +0.1 803,579 - ybhJ b0771 0.38 +0.6 803,586 + ybhJ b0771 0.38 -0.2 803,735 - ybhJ b0771 0.45 +0.7 803,735 - ybhJ b0771 0.45 +0.1 804,094 - ybhJ b0771 0.60 -0.1 804,101 - ybhJ b0771 0.61 -0.3 804,101 - ybhJ b0771 0.61 -0.1 804,104 - ybhJ b0771 0.61 +0.2 804,197 + ybhJ b0771 0.65 -0.3 804,305 + ybhJ b0771 0.70 +0.1 804,305 + ybhJ b0771 0.70 -1.2 804,584 + ybhJ b0771 0.82 +0.3 804,584 + ybhJ b0771 0.82 -0.4 804,618 + ybhJ b0771 0.84 -0.4 804,618 + ybhJ b0771 0.84 +0.2 804,626 - ybhJ b0771 0.84 +0.8 804,739 - ybhJ b0771 0.89 -0.1 804,793 - +0.3 804,793 - -0.2 804,861 - +0.2 804,911 - -0.2 804,911 - +0.3 804,928 - -0.3 805,001 + -0.1 805,026 + -0.0 805,271 - -0.2 805,319 - +0.5 805,334 - -0.6 805,441 - ybhC b0772 0.17 -0.0 805,585 + ybhC b0772 0.28 -0.0 805,674 - ybhC b0772 0.35 +0.1 805,683 - ybhC b0772 0.36 +1.0 805,726 - ybhC b0772 0.39 -0.3 805,736 - ybhC b0772 0.40 +0.1 805,757 - ybhC b0772 0.42 -0.2 805,757 - ybhC b0772 0.42 +0.1 805,759 - ybhC b0772 0.42 +0.3 805,774 + ybhC b0772 0.43 +0.0 805,774 + ybhC b0772 0.43 -0.7 805,782 - ybhC b0772 0.44 -1.5 805,782 - ybhC b0772 0.44 -0.2 805,801 + ybhC b0772 0.45 +0.1 805,920 - ybhC b0772 0.54 -0.4 805,935 - ybhC b0772 0.56 +0.8 805,956 + ybhC b0772 0.57 +0.5 805,956 + ybhC b0772 0.57 -0.1
Or see this region's nucleotide sequence