Experiment: Ying_Nucleobase14 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yajR and cyoE are separated by 148 nucleotides cyoE and cyoD are separated by 11 nucleotides cyoD and cyoC overlap by 1 nucleotides cyoC and cyoB overlap by 11 nucleotides
b0427: yajR - putative transport protein (VIMSS), at 444,526 to 445,890
yajR
b0428: cyoE - protoheme IX farnesyltransferase (NCBI), at 446,039 to 446,929
cyoE
b0429: cyoD - cytochrome o ubiquinol oxidase subunit IV (NCBI), at 446,941 to 447,270
cyoD
b0430: cyoC - cytochrome o ubiquinol oxidase subunit III (NCBI), at 447,270 to 447,884
cyoC
b0431: cyoB - cytochrome o ubiquinol oxidase subunit I (NCBI), at 447,874 to 449,865
cyoB
Position (kb) 446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 445.082 kb on - strand, within yajR at 445.114 kb on + strand, within yajR at 445.114 kb on + strand, within yajR at 445.138 kb on + strand, within yajR at 445.138 kb on + strand, within yajR at 445.147 kb on - strand, within yajR at 445.166 kb on + strand, within yajR at 445.300 kb on - strand, within yajR at 445.306 kb on + strand, within yajR at 445.319 kb on + strand, within yajR at 445.319 kb on + strand, within yajR at 445.355 kb on + strand, within yajR at 445.376 kb on - strand, within yajR at 445.376 kb on - strand, within yajR at 445.382 kb on + strand, within yajR at 445.456 kb on + strand, within yajR at 445.461 kb on + strand, within yajR at 445.469 kb on - strand, within yajR at 445.469 kb on - strand, within yajR at 445.522 kb on - strand, within yajR at 445.558 kb on + strand, within yajR at 445.749 kb on - strand, within yajR at 445.775 kb on - strand at 445.799 kb on + strand at 445.805 kb on + strand at 445.807 kb on - strand at 445.833 kb on - strand at 445.926 kb on - strand at 445.926 kb on - strand at 445.927 kb on - strand at 445.927 kb on - strand at 445.927 kb on - strand at 445.927 kb on - strand at 445.978 kb on + strand at 446.028 kb on - strand at 446.028 kb on - strand at 446.054 kb on + strand at 446.069 kb on - strand at 446.069 kb on - strand at 446.096 kb on + strand at 446.101 kb on - strand at 446.119 kb on + strand at 446.140 kb on - strand, within cyoE at 446.161 kb on - strand, within cyoE at 446.242 kb on - strand, within cyoE at 446.297 kb on - strand, within cyoE at 446.394 kb on + strand, within cyoE at 446.394 kb on + strand, within cyoE at 446.394 kb on + strand, within cyoE at 446.407 kb on - strand, within cyoE at 446.525 kb on + strand, within cyoE at 446.525 kb on + strand, within cyoE at 446.533 kb on - strand, within cyoE at 446.562 kb on - strand, within cyoE at 446.562 kb on - strand, within cyoE at 446.657 kb on + strand, within cyoE at 446.657 kb on + strand, within cyoE at 446.673 kb on - strand, within cyoE at 446.677 kb on + strand, within cyoE at 446.677 kb on + strand, within cyoE at 446.796 kb on - strand, within cyoE at 446.824 kb on + strand, within cyoE at 446.832 kb on - strand, within cyoE at 446.880 kb on + strand at 446.880 kb on + strand at 446.932 kb on + strand at 446.944 kb on + strand at 446.981 kb on - strand, within cyoD at 447.018 kb on - strand, within cyoD at 447.093 kb on - strand, within cyoD at 447.093 kb on - strand, within cyoD at 447.105 kb on - strand, within cyoD at 447.161 kb on - strand, within cyoD at 447.167 kb on + strand, within cyoD at 447.175 kb on - strand, within cyoD at 447.201 kb on + strand, within cyoD at 447.223 kb on - strand, within cyoD at 447.285 kb on - strand at 447.303 kb on - strand at 447.347 kb on + strand, within cyoC at 447.351 kb on + strand, within cyoC at 447.373 kb on - strand, within cyoC at 447.407 kb on + strand, within cyoC at 447.418 kb on - strand, within cyoC at 447.445 kb on - strand, within cyoC at 447.492 kb on + strand, within cyoC at 447.492 kb on + strand, within cyoC at 447.521 kb on + strand, within cyoC at 447.570 kb on + strand, within cyoC at 447.580 kb on + strand, within cyoC at 447.679 kb on + strand, within cyoC
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3 remove 445,082 - yajR b0427 0.41 -0.2 445,114 + yajR b0427 0.43 -1.0 445,114 + yajR b0427 0.43 +0.9 445,138 + yajR b0427 0.45 -1.1 445,138 + yajR b0427 0.45 -0.9 445,147 - yajR b0427 0.45 -0.9 445,166 + yajR b0427 0.47 -1.4 445,300 - yajR b0427 0.57 -0.1 445,306 + yajR b0427 0.57 -0.9 445,319 + yajR b0427 0.58 -0.3 445,319 + yajR b0427 0.58 -0.9 445,355 + yajR b0427 0.61 -2.0 445,376 - yajR b0427 0.62 -0.0 445,376 - yajR b0427 0.62 -1.5 445,382 + yajR b0427 0.63 -0.5 445,456 + yajR b0427 0.68 -0.3 445,461 + yajR b0427 0.68 -0.9 445,469 - yajR b0427 0.69 +0.4 445,469 - yajR b0427 0.69 -0.2 445,522 - yajR b0427 0.73 -1.6 445,558 + yajR b0427 0.76 -0.9 445,749 - yajR b0427 0.90 -0.8 445,775 - +0.6 445,799 + -0.9 445,805 + -0.6 445,807 - -1.5 445,833 - -0.8 445,926 - -0.5 445,926 - -2.5 445,927 - -0.2 445,927 - -0.3 445,927 - +0.5 445,927 - -0.8 445,978 + +0.2 446,028 - -0.3 446,028 - -1.6 446,054 + -0.2 446,069 - -0.1 446,069 - -0.2 446,096 + -1.3 446,101 - -2.5 446,119 + -1.9 446,140 - cyoE b0428 0.11 -2.2 446,161 - cyoE b0428 0.14 -2.5 446,242 - cyoE b0428 0.23 -1.4 446,297 - cyoE b0428 0.29 -0.8 446,394 + cyoE b0428 0.40 -2.2 446,394 + cyoE b0428 0.40 -2.4 446,394 + cyoE b0428 0.40 -0.4 446,407 - cyoE b0428 0.41 -0.5 446,525 + cyoE b0428 0.55 -1.2 446,525 + cyoE b0428 0.55 -2.5 446,533 - cyoE b0428 0.55 -1.1 446,562 - cyoE b0428 0.59 -1.6 446,562 - cyoE b0428 0.59 -1.3 446,657 + cyoE b0428 0.69 -1.2 446,657 + cyoE b0428 0.69 -2.0 446,673 - cyoE b0428 0.71 -2.6 446,677 + cyoE b0428 0.72 -1.4 446,677 + cyoE b0428 0.72 -1.0 446,796 - cyoE b0428 0.85 -3.0 446,824 + cyoE b0428 0.88 -1.9 446,832 - cyoE b0428 0.89 -2.6 446,880 + -1.5 446,880 + -1.8 446,932 + -1.1 446,944 + -1.2 446,981 - cyoD b0429 0.12 -1.3 447,018 - cyoD b0429 0.23 -3.1 447,093 - cyoD b0429 0.46 -1.3 447,093 - cyoD b0429 0.46 -1.2 447,105 - cyoD b0429 0.50 -2.0 447,161 - cyoD b0429 0.67 -2.3 447,167 + cyoD b0429 0.68 -1.1 447,175 - cyoD b0429 0.71 -1.8 447,201 + cyoD b0429 0.79 -1.0 447,223 - cyoD b0429 0.85 -0.6 447,285 - -1.9 447,303 - -0.7 447,347 + cyoC b0430 0.13 -2.4 447,351 + cyoC b0430 0.13 -2.1 447,373 - cyoC b0430 0.17 -1.9 447,407 + cyoC b0430 0.22 -3.1 447,418 - cyoC b0430 0.24 -1.6 447,445 - cyoC b0430 0.28 -1.8 447,492 + cyoC b0430 0.36 -2.9 447,492 + cyoC b0430 0.36 -1.4 447,521 + cyoC b0430 0.41 -1.1 447,570 + cyoC b0430 0.49 -1.8 447,580 + cyoC b0430 0.50 -1.1 447,679 + cyoC b0430 0.67 -1.9
Or see this region's nucleotide sequence