Strain Fitness in Escherichia coli BW25113 around b0048

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
48,907	+	kefC	b0047	0.61	-0.2
48,958	+	kefC	b0047	0.64	+0.8
48,968	-	kefC	b0047	0.64	+0.6
49,068	-	kefC	b0047	0.70	-0.3
49,068	-	kefC	b0047	0.70	-0.1
49,149	-	kefC	b0047	0.74	+0.8
49,149	-	kefC	b0047	0.74	+0.7
49,202	+	kefC	b0047	0.77	+0.2
49,281	+	kefC	b0047	0.81	+0.1
49,289	-	kefC	b0047	0.82	-1.4
49,289	-	kefC	b0047	0.82	+0.2
49,334	+	kefC	b0047	0.84	-1.8
49,334	+	kefC	b0047	0.84	+0.3
49,356	-	kefC	b0047	0.85	-0.2
49,356	-	kefC	b0047	0.85	-1.5
49,369	+	kefC	b0047	0.86	+0.1
49,369	+	kefC	b0047	0.86	-0.0
49,409	-	kefC	b0047	0.88	-0.0
49,431	+	kefC	b0047	0.89	-0.3
49,487	-				+0.2
49,493	-				+0.5
49,709	+				-0.2
50,361	+				+0.2
50,361	+				+0.2
50,370	-				-0.3
50,376	+				+0.1
50,461	+				-1.8
50,469	-	apaH	b0049	0.11	-1.9
50,501	+	apaH	b0049	0.14	-1.4
50,507	-	apaH	b0049	0.15	-1.8
50,568	-	apaH	b0049	0.22	-1.6
50,717	-	apaH	b0049	0.40	-2.9
50,785	-	apaH	b0049	0.48	-2.9
50,791	+	apaH	b0049	0.49	-0.9
50,802	+	apaH	b0049	0.50	-2.8
50,829	-	apaH	b0049	0.53	-0.6
50,859	-	apaH	b0049	0.57	-0.8
50,877	+	apaH	b0049	0.59	+0.2
50,877	+	apaH	b0049	0.59	-0.4
51,025	+	apaH	b0049	0.77	-2.2
51,109	-	apaH	b0049	0.86	-3.7
51,177	+				-1.6
51,177	+				-1.1
51,185	-				-2.7
51,190	+				-3.0
51,190	+				-1.7
51,240	+				+0.0
51,240	+				-0.4