Strain Fitness in Escherichia coli BW25113 around b4389

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
4,622,944	+				+0.4
4,622,952	-				-3.8
4,622,952	-				-4.2
4,622,977	-				-5.9
4,623,023	+	serB	b4388	0.11	-3.6
4,623,023	-	serB	b4388	0.11	-4.1
4,623,038	+	serB	b4388	0.12	-4.6
4,623,038	+	serB	b4388	0.12	-3.7
4,623,048	+	serB	b4388	0.13	-3.5
4,623,048	+	serB	b4388	0.13	-3.6
4,623,056	-	serB	b4388	0.14	-5.5
4,623,109	-	serB	b4388	0.20	-3.9
4,623,126	-	serB	b4388	0.21	-3.7
4,623,126	-	serB	b4388	0.21	-4.2
4,623,202	+	serB	b4388	0.29	-6.0
4,623,296	+	serB	b4388	0.39	-4.8
4,623,352	-	serB	b4388	0.45	-2.8
4,623,352	-	serB	b4388	0.45	-1.9
4,623,551	+	serB	b4388	0.65	-5.3
4,623,691	+	serB	b4388	0.80	-4.0
4,623,691	+	serB	b4388	0.80	-4.5
4,623,746	-	serB	b4388	0.85	-3.7
4,623,832	+				-3.8
4,623,832	+				-3.1
4,623,860	+				-4.7
4,623,895	+				+0.4
4,623,895	+				-0.8
4,623,910	-				-1.0
4,623,925	-				+0.1
4,623,925	-				+0.6
4,623,933	-				-0.0
4,624,047	+				+0.5
4,624,047	+				-1.8
4,624,050	+				-0.3
4,624,104	-	radA	b4389	0.12	+0.3
4,624,104	-	radA	b4389	0.12	+0.4
4,624,121	+	radA	b4389	0.13	+0.4
4,624,173	+	radA	b4389	0.17	-2.1
4,624,173	+	radA	b4389	0.17	+0.3
4,624,173	+	radA	b4389	0.17	+0.2
4,624,181	-	radA	b4389	0.18	+0.0
4,624,181	-	radA	b4389	0.18	+0.5
4,624,211	+	radA	b4389	0.20	-0.2
4,624,219	-	radA	b4389	0.21	+0.6
4,624,334	+	radA	b4389	0.29	-0.6
4,624,405	-	radA	b4389	0.34	+0.5
4,624,405	-	radA	b4389	0.34	+0.6
4,624,422	+	radA	b4389	0.35	+0.2
4,624,490	+	radA	b4389	0.40	-0.2
4,624,490	+	radA	b4389	0.40	-1.0
4,624,498	-	radA	b4389	0.41	+0.4
4,624,532	-	radA	b4389	0.43	+0.2
4,624,569	+	radA	b4389	0.46	+0.3
4,624,620	+	radA	b4389	0.50	+0.3
4,624,648	-	radA	b4389	0.52	-0.1
4,624,755	+	radA	b4389	0.59	-1.2
4,624,755	+	radA	b4389	0.59	-2.1
4,624,826	+	radA	b4389	0.64	-0.6
4,624,826	+	radA	b4389	0.64	+0.6
4,624,827	+	radA	b4389	0.64	+0.6
4,624,832	+	radA	b4389	0.65	-0.2
4,624,855	-	radA	b4389	0.67	-0.0
4,624,864	+	radA	b4389	0.67	-0.1
4,624,898	+	radA	b4389	0.70	+0.3
4,624,898	+	radA	b4389	0.70	-0.2
4,624,934	+	radA	b4389	0.72	-0.5
4,625,079	+	radA	b4389	0.83	+0.6
4,625,167	-	radA	b4389	0.89	+0.6
4,625,167	-	radA	b4389	0.89	+0.0
4,625,167	-	radA	b4389	0.89	-0.2
4,625,168	+	radA	b4389	0.89	-1.5
4,625,300	-				-0.8
4,625,300	-				-0.0
4,625,302	-				-0.2
4,625,311	+				-0.4
4,625,322	-				+0.1
4,625,327	-				-0.4
4,625,389	+				+0.5
4,625,397	-				+0.8
4,625,404	+				+0.7
4,625,404	+				+0.2
4,625,429	+				+1.3
4,625,436	-				+0.5
4,625,436	-				+1.0
4,625,577	+	nadR	b4390	0.19	+0.8
4,625,577	+	nadR	b4390	0.19	+0.4
4,625,597	+	nadR	b4390	0.21	+0.4
4,625,597	+	nadR	b4390	0.21	+0.4
4,625,625	-	nadR	b4390	0.23	+0.6
4,625,625	-	nadR	b4390	0.23	+0.3
4,625,652	-	nadR	b4390	0.25	-0.5
4,625,652	-	nadR	b4390	0.25	+1.7
4,625,652	-	nadR	b4390	0.25	+0.9
4,625,703	-	nadR	b4390	0.30	+0.7
4,625,761	-	nadR	b4390	0.34	+1.3
4,625,774	+	nadR	b4390	0.35	+0.5
4,625,774	+	nadR	b4390	0.35	-0.0
4,625,780	-	nadR	b4390	0.36	+0.4
4,625,780	-	nadR	b4390	0.36	+0.5
4,625,795	+	nadR	b4390	0.37	+1.0
4,625,795	+	nadR	b4390	0.37	+0.5
4,625,803	-	nadR	b4390	0.38	+1.4
4,625,854	+	nadR	b4390	0.42	+1.0
4,625,854	+	nadR	b4390	0.42	+0.7
4,625,857	-	nadR	b4390	0.42	+1.3
4,625,892	+	nadR	b4390	0.45	-0.1
4,625,900	-	nadR	b4390	0.46	+2.0
4,625,920	+	nadR	b4390	0.47	+1.2
4,625,920	+	nadR	b4390	0.47	+3.6
4,625,930	+	nadR	b4390	0.48	-0.1
4,625,951	+	nadR	b4390	0.50	+1.0
4,625,960	-	nadR	b4390	0.50	+0.7
4,626,064	+	nadR	b4390	0.59	+2.0
4,626,064	+	nadR	b4390	0.59	+0.8
4,626,105	-	nadR	b4390	0.62	+0.5
4,626,105	-	nadR	b4390	0.62	+0.9
4,626,143	+	nadR	b4390	0.65	-1.2
4,626,179	+	nadR	b4390	0.68	-0.7
4,626,308	-	nadR	b4390	0.79	+0.1