Strain Fitness in Escherichia coli BW25113 around b1637
Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Nucleobase14 rep B; time point 3 |
---|---|---|---|---|---|
remove | |||||
1,713,214 | + | pdxY | b1636 | 0.19 | -0.3 |
1,713,223 | + | pdxY | b1636 | 0.20 | -1.1 |
1,713,223 | + | pdxY | b1636 | 0.20 | -3.6 |
1,713,223 | + | pdxY | b1636 | 0.20 | -0.1 |
1,713,352 | - | pdxY | b1636 | 0.35 | -0.7 |
1,713,469 | + | pdxY | b1636 | 0.48 | +0.0 |
1,713,546 | - | pdxY | b1636 | 0.57 | -0.2 |
1,713,571 | + | pdxY | b1636 | 0.60 | -0.4 |
1,713,571 | + | pdxY | b1636 | 0.60 | -1.8 |
1,713,624 | - | pdxY | b1636 | 0.66 | -0.3 |
1,713,889 | + | +0.2 | |||
1,713,889 | + | +0.1 | |||
1,713,913 | + | +0.1 | |||
1,713,913 | + | -0.3 | |||
1,715,267 | - | +0.0 | |||
1,715,267 | - | +0.6 | |||
1,716,201 | - | ydhA | b1639 | 0.34 | -0.1 |
1,716,224 | + | ydhA | b1639 | 0.41 | +0.8 |
1,716,226 | + | ydhA | b1639 | 0.41 | -2.1 |
1,716,226 | + | ydhA | b1639 | 0.41 | +0.2 |
Or see this region's nucleotide sequence