Strain Fitness in Escherichia coli BW25113 around b0442

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
462,192	+	ppiD	b0441	0.56	+0.3
462,210	-	ppiD	b0441	0.57	-1.1
462,210	-	ppiD	b0441	0.57	-0.9
462,255	-	ppiD	b0441	0.60	+1.1
462,287	+	ppiD	b0441	0.61	+0.3
462,290	-	ppiD	b0441	0.61	-0.2
462,334	-	ppiD	b0441	0.64	-0.8
462,357	-	ppiD	b0441	0.65	-0.4
462,357	-	ppiD	b0441	0.65	+0.4
462,359	+	ppiD	b0441	0.65	+0.4
462,359	+	ppiD	b0441	0.65	+0.4
462,378	+	ppiD	b0441	0.66	+1.1
462,387	+	ppiD	b0441	0.67	+0.2
462,449	+	ppiD	b0441	0.70	-0.6
462,491	+	ppiD	b0441	0.72	+1.2
462,502	-	ppiD	b0441	0.73	+0.7
462,508	-	ppiD	b0441	0.73	-0.0
462,531	-	ppiD	b0441	0.74	-1.0
462,544	-	ppiD	b0441	0.75	+0.4
462,544	-	ppiD	b0441	0.75	-0.1
462,588	-	ppiD	b0441	0.77	-1.6
462,614	+	ppiD	b0441	0.79	+0.4
462,617	-	ppiD	b0441	0.79	-1.2
462,682	-	ppiD	b0441	0.82	-0.1
462,696	-	ppiD	b0441	0.83	+1.5
462,696	-	ppiD	b0441	0.83	+0.8
462,720	+	ppiD	b0441	0.84	+0.5
462,816	+	ppiD	b0441	0.90	+0.3
462,816	+	ppiD	b0441	0.90	+0.3
462,833	-				+0.1
462,833	-				+0.7
462,903	+				+0.4
462,903	+				+0.3
462,918	-				-0.4
462,923	-				-0.1
463,049	+				+0.3
463,049	+				+0.1
463,173	+				+1.3
463,173	+				-0.1
463,182	-				-0.8
463,184	+				-0.1
463,184	+				-1.3
463,184	+				+0.1
463,184	+				+0.7
463,186	+				+0.0
463,192	+				-0.9
463,192	-				-0.9
463,192	-				-0.2
463,193	-				-1.3
463,204	-	ybaV	b0442	0.12	+1.5
463,205	-	ybaV	b0442	0.12	+0.1
463,205	-	ybaV	b0442	0.12	+0.4
463,288	-	ybaV	b0442	0.34	+0.8
463,303	+	ybaV	b0442	0.38	+0.4
463,438	+	ybaV	b0442	0.74	-0.7
463,465	+	ybaV	b0442	0.82	+0.5
463,473	-	ybaV	b0442	0.84	-0.3
463,483	-	ybaV	b0442	0.87	+1.1
463,518	+				-0.2
463,590	+				+0.7
463,608	+				-0.2
463,655	+				+0.0
463,655	+				+0.0
463,761	+	ybaW	b0443	0.34	-0.1
463,761	+	ybaW	b0443	0.34	-1.5
463,775	-	ybaW	b0443	0.37	-0.4
463,775	-	ybaW	b0443	0.37	-0.5
463,826	-	ybaW	b0443	0.50	-0.8
463,879	+	ybaW	b0443	0.63	-0.5
463,879	+	ybaW	b0443	0.63	+0.8
463,897	-	ybaW	b0443	0.68	+0.4
463,911	+	ybaW	b0443	0.71	+0.4
463,920	-	ybaW	b0443	0.74	+0.7
463,920	-	ybaW	b0443	0.74	-0.3
463,977	+	ybaW	b0443	0.88	-0.2
463,977	+	ybaW	b0443	0.88	-1.0
463,977	+	ybaW	b0443	0.88	+0.3
463,977	+	ybaW	b0443	0.88	+0.7
463,979	-	ybaW	b0443	0.88	-0.6
463,986	+				-0.4
463,986	+				+0.2
464,035	+				-0.8
464,035	+				+0.2
464,209	-	ybaX	b0444	0.19	-1.0
464,209	-	ybaX	b0444	0.19	-0.4
464,226	-	ybaX	b0444	0.22	+0.9
464,230	+	ybaX	b0444	0.22	+0.3
464,287	-	ybaX	b0444	0.30	+0.0
464,332	-	ybaX	b0444	0.37	-1.0
464,332	-	ybaX	b0444	0.37	+0.8
464,344	-	ybaX	b0444	0.39	+0.6
464,346	-	ybaX	b0444	0.39	+0.2
464,346	-	ybaX	b0444	0.39	+0.7
464,433	-	ybaX	b0444	0.51	+0.1
464,433	-	ybaX	b0444	0.51	+0.1
464,511	-	ybaX	b0444	0.62	+0.5
464,511	-	ybaX	b0444	0.62	-0.1
464,523	+	ybaX	b0444	0.64	+0.2
464,523	+	ybaX	b0444	0.64	-0.4