Strain Fitness in Escherichia coli BW25113 around b1660

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
1,736,965	+				-1.5
1,737,011	+	ydhB	b1659	0.13	+0.4
1,737,229	-	ydhB	b1659	0.36	-1.8
1,737,332	+	ydhB	b1659	0.47	-0.9
1,737,436	-				-1.1
1,737,689	+	ydhB	b1659	0.86	-0.7
1,737,719	+	ydhB	b1659	0.89	-1.1
1,738,071	+	ydhC	b1660	0.11	-2.2
1,738,195	-	ydhC	b1660	0.21	-1.4
1,738,195	-	ydhC	b1660	0.21	-1.7
1,738,203	+	ydhC	b1660	0.22	-1.2
1,738,203	+	ydhC	b1660	0.22	-0.9
1,738,723	-	ydhC	b1660	0.65	-1.3
1,738,723	-	ydhC	b1660	0.65	-2.1
1,738,896	-	ydhC	b1660	0.79	-2.1
1,738,945	-	ydhC	b1660	0.83	-0.9
1,738,945	-	ydhC	b1660	0.83	-0.9
1,738,966	-	ydhC	b1660	0.85	-1.5
1,739,263	+				+0.4
1,739,431	-				-0.0
1,739,431	-				+0.3
1,739,458	-				-0.5
1,739,473	-				-0.4
1,739,487	+				+4.6
1,739,797	+	cfa	b1661	0.31	-0.8