Strain Fitness in Escherichia coli BW25113 around b4382

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
4,615,261	+				+2.8
4,615,403	-				+1.4
4,615,505	-	deoC	b4381	0.20	+0.7
4,615,505	-	deoC	b4381	0.20	+1.0
4,615,724	-	deoC	b4381	0.48	+1.6
4,615,727	-	deoC	b4381	0.49	+1.3
4,615,734	-	deoC	b4381	0.50	+2.0
4,615,750	+	deoC	b4381	0.52	+3.3
4,615,829	+	deoC	b4381	0.62	+2.8
4,615,829	+	deoC	b4381	0.62	+3.1
4,615,837	-	deoC	b4381	0.63	+1.2
4,616,063	+				+3.4
4,616,133	+				+3.2
4,616,148	-				-1.3
4,616,174	+				+1.3
4,616,198	+				+4.4
4,616,494	-	deoA	b4382	0.18	-1.4
4,616,494	-	deoA	b4382	0.18	-3.4
4,616,511	-	deoA	b4382	0.20	-1.4
4,616,563	-	deoA	b4382	0.24	-1.1
4,616,606	-	deoA	b4382	0.27	-1.3
4,616,663	+	deoA	b4382	0.31	+1.8
4,616,727	-	deoA	b4382	0.36	-0.8
4,616,731	+	deoA	b4382	0.36	+2.7
4,616,749	+	deoA	b4382	0.38	+2.6
4,616,760	+	deoA	b4382	0.38	+2.2
4,616,791	-	deoA	b4382	0.41	-0.7
4,616,823	-	deoA	b4382	0.43	-1.9
4,616,940	-	deoA	b4382	0.52	-1.3
4,616,958	-	deoA	b4382	0.53	-0.8
4,616,958	-	deoA	b4382	0.53	-0.5
4,616,965	+	deoA	b4382	0.54	+3.4
4,616,984	+	deoA	b4382	0.55	+2.1
4,616,987	-	deoA	b4382	0.56	-0.8
4,616,987	-	deoA	b4382	0.56	-0.7
4,616,997	+	deoA	b4382	0.56	+3.9
4,617,084	-	deoA	b4382	0.63	-1.2
4,617,088	+	deoA	b4382	0.63	+2.4
4,617,154	-	deoA	b4382	0.68	-0.7
4,617,158	+	deoA	b4382	0.68	+2.7
4,617,193	-	deoA	b4382	0.71	-0.5
4,617,258	+	deoA	b4382	0.76	+2.7
4,617,278	+	deoA	b4382	0.78	+2.2
4,617,278	+	deoA	b4382	0.78	+3.2
4,617,285	-	deoA	b4382	0.78	-1.6
4,617,386	-	deoA	b4382	0.86	-1.9
4,617,390	-	deoA	b4382	0.86	-1.8
4,617,390	-	deoA	b4382	0.86	-2.2
4,617,396	+	deoA	b4382	0.86	+2.6
4,617,396	+	deoA	b4382	0.86	+3.0
4,617,613	+				-3.7
4,617,631	-				-4.2
4,617,647	+				-4.4
4,617,647	+				-4.1
4,617,647	+				-4.5
4,617,655	-				-3.3
4,617,680	-				-6.7
4,617,691	+				-2.3
4,617,726	-				-4.7
4,617,861	+	deoB	b4383	0.19	-1.9
4,617,869	-	deoB	b4383	0.20	-6.4
4,617,891	-	deoB	b4383	0.22	-5.1
4,617,961	-	deoB	b4383	0.27	-6.6
4,618,009	+	deoB	b4383	0.31	-5.1
4,618,009	+	deoB	b4383	0.31	-4.7
4,618,012	+	deoB	b4383	0.32	-5.2
4,618,012	+	deoB	b4383	0.32	-4.2
4,618,030	+	deoB	b4383	0.33	-2.6
4,618,030	+	deoB	b4383	0.33	-3.4
4,618,076	+	deoB	b4383	0.37	-5.1
4,618,088	+	deoB	b4383	0.38	-3.4
4,618,285	+	deoB	b4383	0.54	-4.4
4,618,335	+	deoB	b4383	0.58	-4.4
4,618,411	+				+0.6
4,618,411	+	deoB	b4383	0.64	-4.4
4,618,411	+	deoB	b4383	0.64	-4.3
4,618,411	+	deoB	b4383	0.64	-4.1
4,618,512	-	deoB	b4383	0.72	-3.6
4,618,512	-	deoB	b4383	0.72	-4.1
4,618,528	+	deoB	b4383	0.74	-2.9
4,618,553	-	deoB	b4383	0.76	-4.4