Strain Fitness in Escherichia coli BW25113 around b4099

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
4,316,654	-	phnK	b4097	0.82	-1.3
4,316,891	-	phnJ	b4098	0.13	-1.5
4,316,929	+	phnJ	b4098	0.17	-0.6
4,316,929	+	phnJ	b4098	0.17	+0.1
4,316,930	-	phnJ	b4098	0.17	-3.8
4,316,932	+	phnJ	b4098	0.17	+0.1
4,317,020	+	phnJ	b4098	0.28	+0.8
4,317,028	-	phnJ	b4098	0.29	-2.7
4,317,034	-	phnJ	b4098	0.30	-1.5
4,317,071	+	phnJ	b4098	0.34	+0.0
4,317,095	+	phnJ	b4098	0.37	-0.1
4,317,114	+	phnJ	b4098	0.39	-0.2
4,317,114	+	phnJ	b4098	0.39	-0.1
4,317,122	-				+1.1
4,317,154	+	phnJ	b4098	0.44	-0.4
4,317,159	+	phnJ	b4098	0.44	-0.2
4,317,168	-	phnJ	b4098	0.45	-1.5
4,317,177	+	phnJ	b4098	0.46	+0.5
4,317,177	+	phnJ	b4098	0.46	-0.4
4,317,210	-	phnJ	b4098	0.50	-2.9
4,317,215	-	phnJ	b4098	0.51	-1.4
4,317,303	+	phnJ	b4098	0.61	-0.4
4,317,340	-	phnJ	b4098	0.66	-1.1
4,317,349	+	phnJ	b4098	0.67	-2.0
4,317,394	-	phnJ	b4098	0.72	-2.1
4,317,402	-	phnJ	b4098	0.73	-0.2
4,317,428	+	phnJ	b4098	0.76	-0.5
4,317,428	+	phnJ	b4098	0.76	+0.0
4,317,481	+	phnJ	b4098	0.82	-0.1
4,317,481	+	phnJ	b4098	0.82	-0.1
4,317,620	+				+0.7
4,317,620	+				-0.1
4,317,631	+				-0.8
4,317,631	+				-0.5
4,317,634	-				-1.8
4,317,639	-				-2.1
4,317,658	-				-3.6
4,317,658	-				-2.4
4,317,686	+				-0.6
4,317,705	+				+0.3
4,317,708	+				-0.1
4,317,708	+				-0.7
4,317,853	+	phnI	b4099	0.22	-0.5
4,317,854	-	phnI	b4099	0.22	+3.7
4,317,980	+	phnI	b4099	0.34	-0.2
4,318,053	+	phnI	b4099	0.40	+0.4
4,318,053	+	phnI	b4099	0.40	+0.4
4,318,081	-	phnI	b4099	0.43	-1.9
4,318,081	-	phnI	b4099	0.43	-1.1
4,318,138	-	phnI	b4099	0.48	-0.7
4,318,217	-	phnI	b4099	0.56	-0.8
4,318,321	-	phnI	b4099	0.66	-3.4
4,318,326	-	phnI	b4099	0.66	-0.0
4,318,392	+	phnI	b4099	0.72	-0.4
4,318,400	+	phnI	b4099	0.73	-0.6
4,318,489	-	phnI	b4099	0.81	-1.6
4,318,549	+	phnI	b4099	0.87	+0.6
4,318,635	-				+0.2
4,318,635	-				-0.2
4,318,687	-				-2.0
4,318,702	-				-1.2
4,318,748	-	phnH	b4100	0.11	-1.8
4,318,799	-	phnH	b4100	0.19	-0.7
4,318,814	+	phnH	b4100	0.22	+0.3
4,318,855	+	phnH	b4100	0.29	+0.5
4,318,855	+	phnH	b4100	0.29	-1.1
4,319,165	+	phnH	b4100	0.82	-0.9
4,319,223	+				-0.2
4,319,223	+				-0.2
4,319,223	+				-1.0
4,319,228	+				-0.1
4,319,258	+				-0.2
4,319,258	+				-0.0
4,319,259	+				-0.4
4,319,274	-				-1.3
4,319,279	-				-0.2
4,319,279	-				-2.1
4,319,354	-	phnG	b4101	0.19	-1.7
4,319,366	-	phnG	b4101	0.22	+0.3
4,319,379	-	phnG	b4101	0.25	-2.5
4,319,434	-	phnG	b4101	0.37	-3.1
4,319,446	-	phnG	b4101	0.40	-1.9
4,319,573	+	phnG	b4101	0.68	+0.4