Strain Fitness in Escherichia coli BW25113 around b4092

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
4,311,499	-	rpiB	b4090	0.28	+0.2
4,311,629	+	rpiB	b4090	0.57	+1.1
4,311,639	+	rpiB	b4090	0.59	-0.3
4,311,639	+	rpiB	b4090	0.59	-0.5
4,311,674	-	rpiB	b4090	0.67	+1.5
4,311,710	+	rpiB	b4090	0.75	+4.5
4,311,744	+	rpiB	b4090	0.82	+0.9
4,311,744	+	rpiB	b4090	0.82	+0.1
4,311,744	+	rpiB	b4090	0.82	+0.3
4,311,754	+	rpiB	b4090	0.85	+0.9
4,311,756	+	rpiB	b4090	0.85	+0.1
4,311,756	+	rpiB	b4090	0.85	-0.1
4,311,756	+	rpiB	b4090	0.85	-0.2
4,311,797	+				+0.2
4,311,852	-				-0.0
4,311,852	-				+0.1
4,311,889	-				-1.0
4,311,933	-	yjdP	b4487	0.13	-0.1
4,311,933	-	yjdP	b4487	0.13	+0.4
4,311,943	-	yjdP	b4487	0.16	+0.2
4,311,969	-	yjdP	b4487	0.24	-0.1
4,311,969	-	yjdP	b4487	0.24	-0.8
4,311,983	-	yjdP	b4487	0.28	-0.0
4,311,983	-	yjdP	b4487	0.28	+1.0
4,312,006	+	yjdP	b4487	0.35	+0.3
4,312,006	+	yjdP	b4487	0.35	-0.4
4,312,006	+	yjdP	b4487	0.35	-0.3
4,312,020	-	yjdP	b4487	0.39	+0.2
4,312,068	-	yjdP	b4487	0.54	+0.3
4,312,193	+				-0.0
4,312,202	+				-0.2
4,312,227	-				-0.6
4,312,256	+				+0.1
4,312,263	-				-0.3
4,312,338	-				+0.3
4,312,375	+				-0.9
4,312,418	-				-0.1
4,312,418	-				+0.4
4,312,567	+	phnP	b4092	0.26	+1.0
4,312,658	-	phnP	b4092	0.38	-0.4
4,312,658	-	phnP	b4092	0.38	+0.1
4,312,663	-	phnP	b4092	0.39	+0.1
4,312,663	-	phnP	b4092	0.39	+0.2
4,312,668	-	phnP	b4092	0.40	-0.3
4,312,668	-	phnP	b4092	0.40	-0.4
4,312,700	+	phnP	b4092	0.44	-0.5
4,312,714	-	phnP	b4092	0.46	+0.2
4,312,720	+	phnP	b4092	0.47	-0.4
4,312,720	+	phnP	b4092	0.47	-0.3
4,312,721	-	phnP	b4092	0.47	-0.7
4,312,728	-	phnP	b4092	0.48	+0.2
4,312,788	-	phnP	b4092	0.55	+0.2
4,312,803	+	phnP	b4092	0.57	-0.0
4,312,808	+	phnP	b4092	0.58	-0.1
4,312,948	-	phnP	b4092	0.77	+0.3
4,312,965	-	phnP	b4092	0.79	+0.0
4,313,024	-	phnP	b4092	0.87	-0.0
4,313,041	+	phnP	b4092	0.89	-0.5
4,313,060	+				+0.1
4,313,094	-				+0.6
4,313,115	-				-0.0
4,313,115	-				-0.2
4,313,127	+				-1.8
4,313,185	-	phnO	b4093	0.13	-0.1
4,313,195	-	phnO	b4093	0.16	+0.0
4,313,274	+	phnO	b4093	0.34	+0.0
4,313,433	+	phnO	b4093	0.70	-0.2
4,313,502	-	phnO	b4093	0.86	+0.5
4,313,502	-	phnO	b4093	0.86	-0.3
4,313,529	-				+0.4
4,313,529	-				-0.4
4,313,565	-				-0.3
4,313,634	+	phnN	b4094	0.15	-1.5
4,313,662	-	phnN	b4094	0.20	+0.3
4,313,821	+	phnN	b4094	0.49	+0.0
4,313,821	+	phnN	b4094	0.49	-0.1
4,313,881	-	phnN	b4094	0.60	-0.3
4,313,881	-	phnN	b4094	0.60	+0.7
4,313,956	-	phnN	b4094	0.73	-0.1
4,314,001	-	phnN	b4094	0.81	+0.4
4,314,043	+	phnN	b4094	0.89	-0.3
4,314,122	-				-2.0