Strain Fitness in Escherichia coli BW25113 around b2873

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
3,007,137	+	ygeY	b2872	0.29	+0.2
3,007,211	+	ygeY	b2872	0.35	-0.0
3,007,211	+	ygeY	b2872	0.35	+0.2
3,007,316	+	ygeY	b2872	0.44	-0.5
3,007,693	-	ygeY	b2872	0.75	+0.1
3,007,693	-	ygeY	b2872	0.75	-0.5
3,007,695	+	ygeY	b2872	0.75	-0.4
3,007,703	-	ygeY	b2872	0.76	+0.1
3,007,777	-	ygeY	b2872	0.82	+0.5
3,007,884	-				+0.1
3,008,085	-				+0.4
3,008,085	-				-0.3
3,008,382	+	b2873	b2873	0.24	+0.3
3,008,434	-	b2873	b2873	0.28	+0.4
3,008,434	-	b2873	b2873	0.28	+0.4
3,008,751	+	b2873	b2873	0.51	-0.4
3,008,751	+	b2873	b2873	0.51	+0.2
3,008,751	+	b2873	b2873	0.51	-0.5
3,008,751	+	b2873	b2873	0.51	+0.0
3,008,759	+	b2873	b2873	0.51	-0.1
3,008,782	+	b2873	b2873	0.53	+0.1
3,008,782	+	b2873	b2873	0.53	+1.8
3,008,785	-	b2873	b2873	0.53	+0.3
3,008,790	-	b2873	b2873	0.53	+0.1
3,008,836	-	b2873	b2873	0.57	-0.0
3,008,836	-	b2873	b2873	0.57	+0.5
3,008,878	+	b2873	b2873	0.60	+1.1
3,008,984	-	b2873	b2873	0.67	-0.3
3,008,984	-	b2873	b2873	0.67	+0.4
3,009,015	-	b2873	b2873	0.70	+0.2
3,009,015	-	b2873	b2873	0.70	-0.0
3,009,238	+	b2873	b2873	0.86	+0.3
3,009,238	+	b2873	b2873	0.86	-0.9
3,009,253	-	b2873	b2873	0.87	+0.2
3,009,276	-	b2873	b2873	0.88	+2.5
3,009,288	-	b2873	b2873	0.89	+0.2
3,009,323	-				+1.0
3,009,331	+				-0.5
3,009,437	-				-0.5
3,009,437	-				+0.1
3,009,437	-				+0.0
3,009,449	+				-0.9
3,009,449	+				+0.2
3,009,541	+				-0.1
3,009,654	+	yqeA	b2874	0.18	+0.3
3,009,688	+	yqeA	b2874	0.22	-0.5
3,009,701	-	yqeA	b2874	0.23	-0.5
3,009,701	-	yqeA	b2874	0.23	+0.9
3,009,730	+	yqeA	b2874	0.26	+0.3
3,009,816	-	yqeA	b2874	0.36	-0.5
3,009,822	-	yqeA	b2874	0.36	+0.1
3,009,922	-	yqeA	b2874	0.47	-0.3
3,010,002	+	yqeA	b2874	0.56	+0.4
3,010,013	+	yqeA	b2874	0.57	-0.5
3,010,232	+	yqeA	b2874	0.80	-0.5
3,010,232	+	yqeA	b2874	0.80	+0.2
3,010,280	+	yqeA	b2874	0.85	-0.3
3,010,282	+	yqeA	b2874	0.86	+0.2
3,010,282	+	yqeA	b2874	0.86	-0.7
3,010,349	+				+0.2
3,010,390	+				-0.3