Strain Fitness in Escherichia coli BW25113 around b2162

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
2,251,503	+	yeiJ	b2161	0.47	-0.2
2,251,550	-	yeiJ	b2161	0.51	-0.1
2,251,550	-	yeiJ	b2161	0.51	+0.2
2,251,583	-	yeiJ	b2161	0.53	+0.1
2,251,627	+	yeiJ	b2161	0.57	-0.8
2,251,627	+	yeiJ	b2161	0.57	+0.2
2,251,736	+	yeiJ	b2161	0.65	-1.1
2,251,736	+	yeiJ	b2161	0.65	+0.5
2,251,823	-	yeiJ	b2161	0.72	-0.1
2,251,823	-	yeiJ	b2161	0.72	+0.3
2,251,979	-	yeiJ	b2161	0.85	+0.0
2,251,979	-	yeiJ	b2161	0.85	+0.3
2,252,031	-	yeiJ	b2161	0.89	+0.3
2,252,037	-	yeiJ	b2161	0.90	+0.1
2,252,129	-				-0.3
2,252,252	+				-0.9
2,252,252	+				-1.6
2,252,305	-				-0.4
2,252,403	-	rihB	b2162	0.14	-0.4
2,252,403	-	rihB	b2162	0.14	-0.2
2,252,561	+	rihB	b2162	0.31	+0.4
2,252,566	+	rihB	b2162	0.32	+0.4
2,252,616	-	rihB	b2162	0.37	+3.3
2,252,727	-	rihB	b2162	0.49	+0.1
2,252,744	+	rihB	b2162	0.51	+0.1
2,252,800	+	rihB	b2162	0.57	-0.2
2,252,808	-	rihB	b2162	0.57	+0.7
2,252,873	-	rihB	b2162	0.64	-0.4
2,252,907	+	rihB	b2162	0.68	-0.0
2,252,907	+	rihB	b2162	0.68	+1.3
2,252,911	+	rihB	b2162	0.68	+0.0
2,252,915	-	rihB	b2162	0.69	+0.7
2,252,938	-	rihB	b2162	0.71	+0.2
2,252,945	+	rihB	b2162	0.72	-0.1
2,252,949	+	rihB	b2162	0.72	-0.6
2,252,950	+	rihB	b2162	0.73	-0.7
2,252,950	+	rihB	b2162	0.73	+0.8
2,252,990	+	rihB	b2162	0.77	-0.1
2,252,992	+	rihB	b2162	0.77	+0.2
2,252,994	+	rihB	b2162	0.77	-0.0
2,252,999	-	rihB	b2162	0.78	+0.1
2,253,000	-	rihB	b2162	0.78	-1.2
2,253,000	-	rihB	b2162	0.78	+1.3
2,253,002	-	rihB	b2162	0.78	-0.9
2,253,002	-	rihB	b2162	0.78	+0.9
2,253,018	-	rihB	b2162	0.80	+2.9
2,253,020	+	rihB	b2162	0.80	-0.0
2,253,020	+	rihB	b2162	0.80	-1.3
2,253,064	+	rihB	b2162	0.85	+0.6
2,253,100	+	rihB	b2162	0.88	+0.5
2,253,102	+	rihB	b2162	0.89	-0.0
2,253,146	+				+0.3
2,253,146	+				-0.6
2,253,146	+				-0.9
2,253,298	+				-0.1
2,253,334	-				+0.8
2,253,411	-				+2.3
2,253,411	-				+2.3
2,253,415	+				+1.3
2,253,436	-				-0.4
2,253,436	-				+1.5
2,253,462	-	yeiL	b2163	0.13	+1.7
2,253,472	-	yeiL	b2163	0.14	+1.3
2,253,493	+	yeiL	b2163	0.18	+1.3
2,253,503	+	yeiL	b2163	0.19	+2.3
2,253,503	+	yeiL	b2163	0.19	+2.3
2,253,526	+	yeiL	b2163	0.23	+0.3
2,253,543	-	yeiL	b2163	0.25	-1.0
2,253,611	-	yeiL	b2163	0.35	+0.2
2,253,613	+	yeiL	b2163	0.36	+2.3
2,253,613	+	yeiL	b2163	0.36	-0.3
2,253,620	-	yeiL	b2163	0.37	+1.8
2,253,620	-	yeiL	b2163	0.37	-0.5
2,253,620	-	yeiL	b2163	0.37	+0.8
2,253,621	+	yeiL	b2163	0.37	+0.3
2,253,636	+	yeiL	b2163	0.39	+2.3
2,253,637	-	yeiL	b2163	0.39	-0.3
2,253,646	+	yeiL	b2163	0.41	+3.3
2,253,678	+	yeiL	b2163	0.46	-1.7
2,253,836	-	yeiL	b2163	0.70	+0.0
2,253,838	-	yeiL	b2163	0.70	-0.3
2,253,902	-	yeiL	b2163	0.80	+1.3
2,253,911	-	yeiL	b2163	0.81	+2.6
2,253,921	-	yeiL	b2163	0.82	+0.5
2,253,921	-	yeiL	b2163	0.82	-0.3
2,253,984	+				+2.3
2,253,984	-				+2.0
2,253,986	-				-1.5
2,253,986	-				+1.1
2,253,986	-				-0.1
2,253,986	-				+0.1
2,253,996	+				-1.2
2,254,068	-				-1.1
2,254,068	-				+1.1
2,254,088	-				+0.1
2,254,088	-				-0.8
2,254,089	-				+0.6
2,254,100	-				+0.1
2,254,100	-				+0.1
2,254,109	+				+1.3
2,254,113	-				-1.1
2,254,117	-				-0.3
2,254,117	-				-0.3
2,254,117	-				-0.2
2,254,125	-				-0.1
2,254,144	-				+0.2
2,254,144	-				-0.5
2,254,147	-				+0.2
2,254,154	-				+0.2
2,254,158	-				-0.1
2,254,158	-				+0.0
2,254,158	-				-0.0
2,254,173	-				-0.2