Strain Fitness in Escherichia coli BW25113 around b0049

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
49,409	-	kefC	b0047	0.88	+0.0
49,431	+	kefC	b0047	0.89	+0.0
49,487	-				-2.2
49,493	-				+0.5
49,709	+				+0.2
50,361	+				+0.3
50,361	+				-0.7
50,370	-				-0.2
50,376	+				+0.1
50,461	+				-1.9
50,464	-				-0.3
50,469	-	apaH	b0049	0.11	-1.9
50,501	+	apaH	b0049	0.14	-1.5
50,507	-	apaH	b0049	0.15	-1.9
50,568	-	apaH	b0049	0.22	-1.6
50,717	-	apaH	b0049	0.40	-2.9
50,785	-	apaH	b0049	0.48	-2.9
50,791	+	apaH	b0049	0.49	-0.9
50,802	+	apaH	b0049	0.50	-2.9
50,829	-	apaH	b0049	0.53	-0.6
50,859	-	apaH	b0049	0.57	-1.9
50,877	+	apaH	b0049	0.59	+0.2
50,877	+	apaH	b0049	0.59	-0.5
51,025	+	apaH	b0049	0.77	-2.2
51,109	-	apaH	b0049	0.86	-3.8
51,177	+				-1.6
51,177	+				-1.2
51,185	-				-2.7
51,190	+				-3.0
51,190	+				-2.8
51,240	+				-0.8
51,240	+				-0.2
51,311	+	apaG	b0050	0.22	+0.2
51,311	+	apaG	b0050	0.22	-0.2
51,322	-	apaG	b0050	0.25	-0.2
51,326	-	apaG	b0050	0.26	-0.1
51,334	-	apaG	b0050	0.28	-0.4
51,336	-	apaG	b0050	0.28	+0.1
51,353	+	apaG	b0050	0.33	-1.6
51,353	+	apaG	b0050	0.33	-0.5
51,353	-	apaG	b0050	0.33	-0.2
51,364	-	apaG	b0050	0.36	-0.9
51,372	-	apaG	b0050	0.38	-0.5
51,415	+	apaG	b0050	0.49	-1.5
51,423	-	apaG	b0050	0.51	-0.2
51,466	+	apaG	b0050	0.63	+0.4
51,472	+	apaG	b0050	0.64	-0.4
51,512	-	apaG	b0050	0.75	-0.3
51,514	-	apaG	b0050	0.75	-0.8
51,520	-	apaG	b0050	0.77	-0.2
51,524	+	apaG	b0050	0.78	-1.1
51,550	-	apaG	b0050	0.85	+0.5
51,560	+	apaG	b0050	0.88	-0.7
51,567	-	apaG	b0050	0.89	-0.8
51,567	-	apaG	b0050	0.89	-0.2
51,576	+				-1.0
51,576	+				-1.4
51,586	-				-0.6
51,613	+				-0.4
51,614	-				-0.2
51,615	+				-0.2
51,615	+				+0.6
51,673	-				+0.7
51,703	+	ksgA	b0051	0.11	+1.2
51,703	+	ksgA	b0051	0.11	+1.1
51,812	-	ksgA	b0051	0.25	+1.2
51,836	+	ksgA	b0051	0.28	+0.7
51,891	-	ksgA	b0051	0.34	+1.9
51,891	-	ksgA	b0051	0.34	+1.4
51,904	+	ksgA	b0051	0.36	+0.2
51,906	+	ksgA	b0051	0.36	-1.2
51,925	-	ksgA	b0051	0.38	-0.3
52,040	+	ksgA	b0051	0.52	+1.5
52,040	+	ksgA	b0051	0.52	-0.2
52,040	+	ksgA	b0051	0.52	+2.8
52,042	+	ksgA	b0051	0.53	+1.1
52,042	+	ksgA	b0051	0.53	+1.3
52,042	+	ksgA	b0051	0.53	+1.3
52,042	-	ksgA	b0051	0.53	+2.5
52,042	-	ksgA	b0051	0.53	+0.8
52,045	+	ksgA	b0051	0.53	+0.6
52,062	+	ksgA	b0051	0.55	+1.4
52,062	+				+1.8
52,070	-	ksgA	b0051	0.56	+2.0
52,072	+	ksgA	b0051	0.56	+0.6
52,089	-	ksgA	b0051	0.58	+0.4