Strain Fitness in Escherichia coli BW25113 around b3771

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,950,592	-				-4.4
3,950,599	-				-3.2
3,950,631	+	ilvE	b3770	0.13	-5.3
3,950,631	+	ilvE	b3770	0.13	-4.6
3,950,654	+	ilvE	b3770	0.16	-3.6
3,950,654	+	ilvE	b3770	0.16	-4.3
3,950,654	+	ilvE	b3770	0.16	-4.7
3,950,675	+	ilvE	b3770	0.18	-5.5
3,950,675	+	ilvE	b3770	0.18	-4.4
3,950,695	-	ilvE	b3770	0.20	-5.7
3,950,713	+	ilvE	b3770	0.22	-5.0
3,950,789	+	ilvE	b3770	0.30	-3.2
3,950,789	+	ilvE	b3770	0.30	-3.3
3,950,789	+	ilvE	b3770	0.30	-2.0
3,950,797	-	ilvE	b3770	0.31	-2.6
3,950,797	-	ilvE	b3770	0.31	-4.0
3,950,797	-	ilvE	b3770	0.31	-4.6
3,950,798	-	ilvE	b3770	0.31	-6.4
3,950,822	-	ilvE	b3770	0.34	-3.9
3,950,822	-	ilvE	b3770	0.34	-4.1
3,950,828	-	ilvE	b3770	0.35	-3.6
3,950,832	+	ilvE	b3770	0.35	-7.6
3,950,851	+	ilvE	b3770	0.37	-4.0
3,950,851	+	ilvE	b3770	0.37	-4.7
3,950,942	+	ilvE	b3770	0.47	-3.7
3,950,948	-	ilvE	b3770	0.47	-4.9
3,950,952	+	ilvE	b3770	0.48	-4.5
3,950,967	-	ilvE	b3770	0.49	-4.9
3,951,009	-	ilvE	b3770	0.54	-5.8
3,951,022	-	ilvE	b3770	0.55	-5.3
3,951,054	+	ilvE	b3770	0.59	-3.6
3,951,057	-	ilvE	b3770	0.59	-5.0
3,951,164	+	ilvE	b3770	0.71	-2.6
3,951,164	+	ilvE	b3770	0.71	-3.5
3,951,168	-	ilvE	b3770	0.71	-6.1
3,951,170	+	ilvE	b3770	0.71	-4.8
3,951,171	-	ilvE	b3770	0.71	-4.5
3,951,242	+	ilvE	b3770	0.79	-3.6
3,951,247	+	ilvE	b3770	0.80	-4.2
3,951,314	-	ilvE	b3770	0.87	-5.7
3,951,315	+	ilvE	b3770	0.87	-1.7
3,951,323	-	ilvE	b3770	0.88	-2.8
3,951,323	-	ilvE	b3770	0.88	-2.5
3,951,334	+	ilvE	b3770	0.89	-4.1
3,951,390	-				-4.8
3,951,461	-				-1.8
3,951,461	-				-1.7
3,951,499	-				-5.9
3,951,512	-				-3.5
3,951,512	-				-4.9
3,951,571	+				-3.2
3,951,571	+				-3.7
3,951,579	-				-4.9
3,951,613	+				-5.0
3,951,634	+				-6.4
3,951,644	+				-4.1
3,951,756	+	ilvD	b3771	0.14	-4.2
3,951,823	-	ilvD	b3771	0.17	-4.3
3,951,824	-	ilvD	b3771	0.17	-3.9
3,951,838	-	ilvD	b3771	0.18	-4.7
3,951,849	-	ilvD	b3771	0.19	-4.6
3,951,857	+	ilvD	b3771	0.19	-5.1
3,951,895	-	ilvD	b3771	0.21	-5.4
3,952,000	+	ilvD	b3771	0.27	-5.8
3,952,005	+	ilvD	b3771	0.27	-3.3
3,952,005	+	ilvD	b3771	0.27	-2.5
3,952,005	+	ilvD	b3771	0.27	-4.3
3,952,017	+	ilvD	b3771	0.28	-4.2
3,952,017	+	ilvD	b3771	0.28	-4.9
3,952,025	-	ilvD	b3771	0.28	-3.0
3,952,025	-	ilvD	b3771	0.28	-4.1
3,952,099	+	ilvD	b3771	0.32	-0.6
3,952,099	+	ilvD	b3771	0.32	-1.8
3,952,196	+	ilvD	b3771	0.38	-3.9
3,952,201	-	ilvD	b3771	0.38	-2.4
3,952,325	+	ilvD	b3771	0.45	-4.4
3,952,340	+	ilvD	b3771	0.45	-5.2
3,952,353	-	ilvD	b3771	0.46	-5.2
3,952,374	-	ilvD	b3771	0.47	-2.7
3,952,374	-	ilvD	b3771	0.47	-3.0
3,952,433	+	ilvD	b3771	0.50	-4.4
3,952,441	-	ilvD	b3771	0.51	-5.0
3,952,463	+	ilvD	b3771	0.52	-5.0
3,952,465	+	ilvD	b3771	0.52	-4.4
3,952,465	+	ilvD	b3771	0.52	-5.1
3,952,476	+	ilvD	b3771	0.53	-3.4
3,952,527	+	ilvD	b3771	0.55	-2.4
3,952,571	+	ilvD	b3771	0.58	-5.0
3,952,589	+	ilvD	b3771	0.59	-2.5
3,952,589	+	ilvD	b3771	0.59	-3.1
3,952,594	+	ilvD	b3771	0.59	-1.8
3,952,596	-	ilvD	b3771	0.59	-4.9
3,952,605	+	ilvD	b3771	0.60	-5.6
3,952,605	+	ilvD	b3771	0.60	-3.0
3,952,605	+	ilvD	b3771	0.60	-5.5
3,952,675	-	ilvD	b3771	0.63	-5.4
3,952,687	-	ilvD	b3771	0.64	-6.5
3,952,772	+	ilvD	b3771	0.69	-5.0
3,952,777	+	ilvD	b3771	0.69	-4.2
3,952,777	+	ilvD	b3771	0.69	-5.3
3,952,869	+	ilvD	b3771	0.74	-4.8
3,952,869	+	ilvD	b3771	0.74	-5.6
3,952,916	-	ilvD	b3771	0.76	-4.0
3,952,931	-	ilvD	b3771	0.77	-1.3
3,952,957	+	ilvD	b3771	0.79	-4.4
3,952,976	+	ilvD	b3771	0.80	-6.0
3,952,976	+	ilvD	b3771	0.80	-4.7
3,953,020	+	ilvD	b3771	0.82	-5.6
3,953,053	-	ilvD	b3771	0.84	-5.7
3,953,067	-	ilvD	b3771	0.85	-4.7
3,953,118	-	ilvD	b3771	0.87	-3.0
3,953,118	-	ilvD	b3771	0.87	-3.1
3,953,120	+	ilvD	b3771	0.87	-4.0
3,953,120	+	ilvD	b3771	0.87	-4.3
3,953,161	+	ilvD	b3771	0.90	-5.2
3,953,178	-				-4.0
3,953,179	-				-4.9
3,953,179	-				-3.8
3,953,179	-				-4.8
3,953,190	-				-5.1
3,953,193	-				-5.0
3,953,229	-				-4.4
3,953,237	-				-4.0
3,953,242	-				-4.6
3,953,258	+				-5.5
3,953,372	-				-5.0
3,953,381	+				-3.5
3,953,381	+				-3.1
3,953,451	-				-4.4
3,953,480	+				-7.6
3,953,489	-				-3.9
3,953,514	-	ilvA	b3772	0.10	-4.0
3,953,515	+	ilvA	b3772	0.10	-4.1
3,953,525	+	ilvA	b3772	0.11	-4.3
3,953,532	+	ilvA	b3772	0.12	-4.7
3,953,532	+	ilvA	b3772	0.12	-5.8
3,953,532	+	ilvA	b3772	0.12	-4.6
3,953,532	+	ilvA	b3772	0.12	-4.3
3,953,532	+	ilvA	b3772	0.12	-4.0
3,953,540	-	ilvA	b3772	0.12	-3.3
3,953,614	+	ilvA	b3772	0.17	-4.9
3,953,614	+	ilvA	b3772	0.17	-5.2
3,953,646	-	ilvA	b3772	0.19	-5.7
3,953,657	+	ilvA	b3772	0.20	-3.2
3,953,674	-	ilvA	b3772	0.21	-5.4
3,953,712	-	ilvA	b3772	0.23	-3.6
3,953,714	+	ilvA	b3772	0.23	-3.9
3,953,735	+	ilvA	b3772	0.25	-4.6
3,953,743	-	ilvA	b3772	0.25	-2.5
3,953,792	+	ilvA	b3772	0.28	-3.9
3,953,795	-	ilvA	b3772	0.29	-4.5
3,953,802	+	ilvA	b3772	0.29	-4.2
3,953,806	+	ilvA	b3772	0.29	-5.8
3,953,856	+	ilvA	b3772	0.32	-2.5
3,953,856	+	ilvA	b3772	0.32	-4.5
3,953,873	+	ilvA	b3772	0.34	-5.2
3,953,888	+	ilvA	b3772	0.35	-2.4
3,953,888	+	ilvA	b3772	0.35	-3.0
3,953,902	+	ilvA	b3772	0.35	-2.5
3,953,902	+	ilvA	b3772	0.35	-4.0
3,953,902	+	ilvA	b3772	0.35	-2.6
3,953,902	+	ilvA	b3772	0.35	-2.5
3,954,148	+	ilvA	b3772	0.51	-5.7
3,954,211	+	ilvA	b3772	0.55	-4.8
3,954,214	+	ilvA	b3772	0.56	-4.2
3,954,214	+	ilvA	b3772	0.56	-3.1
3,954,235	-	ilvA	b3772	0.57	-4.8
3,954,333	+	ilvA	b3772	0.63	-4.3
3,954,333	+	ilvA	b3772	0.63	-3.1