Strain Fitness in Escherichia coli BW25113 around b4553

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,723,420	-				-0.7
3,723,479	+	ysaB	b4553	0.14	-0.6
3,723,497	+	ysaB	b4553	0.20	-0.0
3,723,504	+	ysaB	b4553	0.23	-3.4
3,723,504	+	ysaB	b4553	0.23	-4.1
3,723,504	+	ysaB	b4553	0.23	-3.4
3,723,530	+	ysaB	b4553	0.31	-0.7
3,723,534	+	ysaB	b4553	0.33	-0.1
3,723,594	+	ysaB	b4553	0.53	-0.6
3,723,607	-	ysaB	b4553	0.57	-0.2
3,723,617	+	ysaB	b4553	0.60	-1.3
3,723,630	+	ysaB	b4553	0.65	-0.8
3,723,636	+	ysaB	b4553	0.67	-2.4
3,723,636	+	ysaB	b4553	0.67	+0.4
3,723,641	+	ysaB	b4553	0.68	-1.4
3,723,649	-	ysaB	b4553	0.71	-0.1
3,723,654	+	ysaB	b4553	0.73	-1.1
3,723,654	+	ysaB	b4553	0.73	-1.4
3,723,668	+	ysaB	b4553	0.77	-2.2
3,723,668	+	ysaB	b4553	0.77	-1.1
3,723,673	+	ysaB	b4553	0.79	-1.5
3,723,675	+	ysaB	b4553	0.80	-0.8
3,723,675	+	ysaB	b4553	0.80	-2.7
3,723,675	+	ysaB	b4553	0.80	-1.1
3,723,675	+	ysaB	b4553	0.80	-0.7
3,723,675	+	ysaB	b4553	0.80	-1.9
3,723,675	+	ysaB	b4553	0.80	-1.6
3,723,675	+	ysaB	b4553	0.80	-1.6
3,723,676	-	ysaB	b4553	0.80	+0.0
3,723,683	-	ysaB	b4553	0.82	+0.7
3,723,683	-	ysaB	b4553	0.82	+1.4
3,723,683	-	ysaB	b4553	0.82	+0.5
3,723,683	-	ysaB	b4553	0.82	-1.0
3,723,733	+				+0.5
3,723,750	+				-2.7
3,723,816	+				-1.1
3,723,816	+				+0.6
3,723,817	+				-2.8
3,723,817	+				-0.8
3,723,821	+				-3.0
3,723,824	-				+0.3
3,723,824	-				+0.4
3,723,824	-				+0.2
3,723,825	-				+0.2
3,723,825	-				+0.4
3,723,825	-				+0.2
3,723,826	+				-1.0
3,723,829	-				-1.2
3,723,844	-				-0.1
3,723,899	-				-0.8
3,723,899	-				+0.6
3,723,902	-				-0.7
3,723,903	-				-0.2
3,723,909	-				+0.1
3,723,913	-				-0.0
3,723,942	+				-0.0
3,723,942	+				-0.5
3,723,944	-				+0.8
3,723,947	+				+0.4
3,723,947	+				-0.6
3,723,954	-				-0.4
3,723,954	-				-0.2
3,723,955	+				-1.3
3,723,959	+				+0.4
3,723,959	+				-0.9
3,723,961	+				+0.4
3,723,964	-				-0.9
3,723,964	-				+1.5
3,723,964	-				+1.9
3,723,972	+				-0.6
3,723,982	+				+1.2
3,723,982	+				+0.8
3,723,983	-				+0.3
3,723,983	-				-0.0
3,723,988	-				+0.9
3,723,988	-				-0.7
3,723,988	-				-0.2
3,723,988	-				+0.2
3,723,988	-				+0.7
3,723,988	-				+0.1
3,723,990	+				-1.0
3,723,990	-				-0.6
3,723,990	-				+1.0
3,723,992	-				+0.3
3,723,992	-				-1.2
3,723,993	-				+0.7
3,723,994	-				-1.0
3,723,996	+				-0.1
3,723,999	-				+1.3
3,724,001	+				-0.9
3,724,001	+				+0.1
3,724,002	+				+0.1
3,724,002	+				-1.5
3,724,002	-				+1.0
3,724,004	+				-0.7
3,724,004	+				-1.1
3,724,005	+				-0.9
3,724,010	+	yiaH	b3561	0.10	-1.2
3,724,012	-	yiaH	b3561	0.10	+0.4
3,724,012	-	yiaH	b3561	0.10	+0.4
3,724,012	-	yiaH	b3561	0.10	+0.2
3,724,012	-	yiaH	b3561	0.10	+0.3
3,724,017	-	yiaH	b3561	0.11	+0.4
3,724,018	-	yiaH	b3561	0.11	+0.5
3,724,022	+	yiaH	b3561	0.11	+1.7
3,724,023	-	yiaH	b3561	0.11	+0.4
3,724,025	-	yiaH	b3561	0.12	+0.1
3,724,032	-	yiaH	b3561	0.12	-0.6
3,724,050	-	yiaH	b3561	0.14	+0.5
3,724,050	-	yiaH	b3561	0.14	-0.9
3,724,060	+	yiaH	b3561	0.15	-1.1
3,724,118	+	yiaH	b3561	0.21	+0.4
3,724,126	-	yiaH	b3561	0.22	+0.2
3,724,143	-	yiaH	b3561	0.23	-0.1
3,724,159	+	yiaH	b3561	0.25	-1.7
3,724,169	+	yiaH	b3561	0.26	-0.0
3,724,169	+	yiaH	b3561	0.26	+0.5
3,724,180	+	yiaH	b3561	0.27	+0.3
3,724,180	+	yiaH	b3561	0.27	+0.2
3,724,182	+	yiaH	b3561	0.27	-0.8
3,724,182	+	yiaH	b3561	0.27	-0.4
3,724,182	+	yiaH	b3561	0.27	-1.8
3,724,182	+	yiaH	b3561	0.27	-0.0
3,724,182	+	yiaH	b3561	0.27	-2.1
3,724,182	+	yiaH	b3561	0.27	+0.4
3,724,182	+	yiaH	b3561	0.27	-0.9
3,724,189	+	yiaH	b3561	0.28	-0.2
3,724,190	-	yiaH	b3561	0.28	+0.6
3,724,190	-	yiaH	b3561	0.28	-1.4
3,724,190	-	yiaH	b3561	0.28	+0.9
3,724,190	-	yiaH	b3561	0.28	+0.2
3,724,190	-	yiaH	b3561	0.28	-1.5
3,724,190	-	yiaH	b3561	0.28	+0.5
3,724,190	-	yiaH	b3561	0.28	+0.3
3,724,190	-	yiaH	b3561	0.28	+0.3
3,724,190	-	yiaH	b3561	0.28	+0.2
3,724,190	-	yiaH	b3561	0.28	+1.2
3,724,195	-	yiaH	b3561	0.29	+0.5
3,724,205	-	yiaH	b3561	0.30	+1.5
3,724,210	+	yiaH	b3561	0.30	-1.5
3,724,210	+	yiaH	b3561	0.30	-3.1
3,724,212	+	yiaH	b3561	0.30	-2.1
3,724,212	+	yiaH	b3561	0.30	-3.5
3,724,249	+	yiaH	b3561	0.34	+0.2
3,724,249	+	yiaH	b3561	0.34	-1.2
3,724,303	+	yiaH	b3561	0.39	-0.7
3,724,303	+	yiaH	b3561	0.39	-1.1
3,724,311	-	yiaH	b3561	0.40	+0.6
3,724,311	-	yiaH	b3561	0.40	-1.0
3,724,314	+	yiaH	b3561	0.41	-0.3
3,724,322	-	yiaH	b3561	0.41	+2.2
3,724,322	-	yiaH	b3561	0.41	+0.6
3,724,358	-	yiaH	b3561	0.45	+1.0
3,724,359	+	yiaH	b3561	0.45	-0.9
3,724,359	+	yiaH	b3561	0.45	+0.0
3,724,385	-	yiaH	b3561	0.48	+0.8
3,724,397	-	yiaH	b3561	0.49	+0.3
3,724,428	+	yiaH	b3561	0.52	-0.4
3,724,434	-	yiaH	b3561	0.53	+0.5
3,724,434	-	yiaH	b3561	0.53	+0.0
3,724,448	+	yiaH	b3561	0.54	-0.2
3,724,459	+	yiaH	b3561	0.55	-0.9
3,724,459	+	yiaH	b3561	0.55	-0.3
3,724,470	-	yiaH	b3561	0.56	+0.5
3,724,472	-	yiaH	b3561	0.56	+0.6
3,724,472	-	yiaH	b3561	0.56	+0.4
3,724,479	-	yiaH	b3561	0.57	+1.0
3,724,481	+	yiaH	b3561	0.57	-1.5
3,724,481	+	yiaH	b3561	0.57	-2.2
3,724,481	+	yiaH	b3561	0.57	-1.3
3,724,481	+	yiaH	b3561	0.57	-0.9
3,724,482	+	yiaH	b3561	0.57	-0.1
3,724,482	+	yiaH	b3561	0.57	-1.3
3,724,483	+	yiaH	b3561	0.58	-2.3
3,724,483	+	yiaH	b3561	0.58	-0.7
3,724,484	+	yiaH	b3561	0.58	+0.1
3,724,484	+	yiaH	b3561	0.58	+0.0
3,724,484	+	yiaH	b3561	0.58	-0.7
3,724,484	+	yiaH	b3561	0.58	-0.2
3,724,484	+	yiaH	b3561	0.58	-0.5
3,724,484	+	yiaH	b3561	0.58	-0.1
3,724,484	+	yiaH	b3561	0.58	+1.4
3,724,484	+	yiaH	b3561	0.58	+0.4
3,724,484	+	yiaH	b3561	0.58	+0.2
3,724,489	-	yiaH	b3561	0.58	-0.7
3,724,489	-	yiaH	b3561	0.58	+0.8
3,724,489	-	yiaH	b3561	0.58	-2.1
3,724,489	-	yiaH	b3561	0.58	+0.8
3,724,489	-	yiaH	b3561	0.58	+0.3
3,724,489	-	yiaH	b3561	0.58	+1.3
3,724,489	-	yiaH	b3561	0.58	+2.3
3,724,489	-	yiaH	b3561	0.58	+1.4
3,724,489	-	yiaH	b3561	0.58	+0.6
3,724,489	-	yiaH	b3561	0.58	-1.5
3,724,489	-	yiaH	b3561	0.58	+0.7
3,724,489	-	yiaH	b3561	0.58	+1.0
3,724,491	+	yiaH	b3561	0.58	-1.1
3,724,492	+	yiaH	b3561	0.58	-0.7
3,724,492	-	yiaH	b3561	0.58	+2.4
3,724,492	-	yiaH	b3561	0.58	+0.0
3,724,492	-	yiaH	b3561	0.58	+1.4
3,724,492	-	yiaH	b3561	0.58	+0.1
3,724,492	-	yiaH	b3561	0.58	+0.3
3,724,492	-	yiaH	b3561	0.58	+0.0
3,724,492	-	yiaH	b3561	0.58	-0.9
3,724,492	-	yiaH	b3561	0.58	+0.2
3,724,492	-	yiaH	b3561	0.58	+0.7
3,724,492	-	yiaH	b3561	0.58	-1.5
3,724,492	-	yiaH	b3561	0.58	-0.2
3,724,492	-	yiaH	b3561	0.58	-0.8
3,724,492	-	yiaH	b3561	0.58	+0.2
3,724,494	+	yiaH	b3561	0.59	+0.4
3,724,494	+	yiaH	b3561	0.59	+0.9
3,724,494	+	yiaH	b3561	0.59	-1.5
3,724,497	-	yiaH	b3561	0.59	+0.7
3,724,501	+	yiaH	b3561	0.59	-1.9
3,724,502	-	yiaH	b3561	0.59	+1.1
3,724,502	-	yiaH	b3561	0.59	+0.1
3,724,504	+	yiaH	b3561	0.60	-1.0
3,724,504	+	yiaH	b3561	0.60	-1.4
3,724,504	+	yiaH	b3561	0.60	-0.1
3,724,504	+	yiaH	b3561	0.60	-0.7
3,724,504	-	yiaH	b3561	0.60	+0.9
3,724,506	+	yiaH	b3561	0.60	+0.0
3,724,506	+	yiaH	b3561	0.60	-0.4
3,724,506	+	yiaH	b3561	0.60	+0.0
3,724,506	+	yiaH	b3561	0.60	-0.5
3,724,506	+	yiaH	b3561	0.60	-2.6
3,724,506	+	yiaH	b3561	0.60	-0.8
3,724,506	+	yiaH	b3561	0.60	-1.0
3,724,506	+	yiaH	b3561	0.60	-0.0
3,724,506	+	yiaH	b3561	0.60	-0.2
3,724,506	+	yiaH	b3561	0.60	-0.5
3,724,506	+	yiaH	b3561	0.60	-0.1
3,724,506	+	yiaH	b3561	0.60	-0.1
3,724,506	+	yiaH	b3561	0.60	-0.1
3,724,506	+	yiaH	b3561	0.60	-0.4
3,724,506	+	yiaH	b3561	0.60	-0.0
3,724,508	+	yiaH	b3561	0.60	-0.5
3,724,508	+	yiaH	b3561	0.60	-0.5
3,724,515	+	yiaH	b3561	0.61	+0.2
3,724,515	+	yiaH	b3561	0.61	+0.6
3,724,518	+	yiaH	b3561	0.61	+0.2
3,724,518	+	yiaH	b3561	0.61	-0.6
3,724,518	+	yiaH	b3561	0.61	-0.9
3,724,518	+	yiaH	b3561	0.61	-0.4
3,724,518	+	yiaH	b3561	0.61	-0.2
3,724,524	+	yiaH	b3561	0.62	-1.1
3,724,524	+	yiaH	b3561	0.62	-0.3
3,724,524	+	yiaH	b3561	0.62	+0.1
3,724,524	+	yiaH	b3561	0.62	-0.2
3,724,524	+	yiaH	b3561	0.62	-0.3
3,724,524	+	yiaH	b3561	0.62	-0.5
3,724,524	+	yiaH	b3561	0.62	+0.2
3,724,526	-	yiaH	b3561	0.62	+0.5
3,724,528	-	yiaH	b3561	0.62	-1.4
3,724,529	+	yiaH	b3561	0.62	-0.3
3,724,531	+	yiaH	b3561	0.62	-2.0
3,724,532	-	yiaH	b3561	0.62	+1.8
3,724,539	+	yiaH	b3561	0.63	+0.3
3,724,539	+	yiaH	b3561	0.63	-0.5
3,724,547	-	yiaH	b3561	0.64	+1.3
3,724,576	+	yiaH	b3561	0.67	-1.7
3,724,576	+	yiaH	b3561	0.67	-0.0
3,724,581	-	yiaH	b3561	0.67	+2.6
3,724,583	+	yiaH	b3561	0.68	+0.0
3,724,583	+	yiaH	b3561	0.68	-0.5
3,724,610	+	yiaH	b3561	0.70	-0.0
3,724,612	+	yiaH	b3561	0.70	-0.0
3,724,612	+	yiaH	b3561	0.70	-0.5
3,724,621	+	yiaH	b3561	0.71	-0.2
3,724,621	-	yiaH	b3561	0.71	-1.3
3,724,621	-	yiaH	b3561	0.71	+0.0
3,724,624	-	yiaH	b3561	0.72	+0.1
3,724,624	-	yiaH	b3561	0.72	+1.2
3,724,625	+	yiaH	b3561	0.72	+0.5
3,724,662	+	yiaH	b3561	0.76	-0.5
3,724,662	+	yiaH	b3561	0.76	-0.1
3,724,668	-	yiaH	b3561	0.76	+1.0
3,724,682	+	yiaH	b3561	0.78	-1.2
3,724,682	+	yiaH	b3561	0.78	-1.8
3,724,686	+	yiaH	b3561	0.78	-0.5
3,724,686	+	yiaH	b3561	0.78	-0.6
3,724,686	+	yiaH	b3561	0.78	-0.2
3,724,691	+	yiaH	b3561	0.78	-0.4
3,724,697	+	yiaH	b3561	0.79	-1.5
3,724,712	+	yiaH	b3561	0.81	-0.3
3,724,725	+	yiaH	b3561	0.82	-0.2
3,724,725	+	yiaH	b3561	0.82	+0.1
3,724,735	+	yiaH	b3561	0.83	-0.4
3,724,735	+	yiaH	b3561	0.83	+0.0