Strain Fitness in Escherichia coli BW25113 around b3563

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,724,434	-	yiaH	b3561	0.53	+0.5
3,724,434	-	yiaH	b3561	0.53	+0.0
3,724,448	+	yiaH	b3561	0.54	-0.2
3,724,459	+	yiaH	b3561	0.55	-0.9
3,724,459	+	yiaH	b3561	0.55	-0.3
3,724,470	-	yiaH	b3561	0.56	+0.5
3,724,472	-	yiaH	b3561	0.56	+0.6
3,724,472	-	yiaH	b3561	0.56	+0.4
3,724,479	-	yiaH	b3561	0.57	+1.0
3,724,481	+	yiaH	b3561	0.57	-1.5
3,724,481	+	yiaH	b3561	0.57	-2.2
3,724,481	+	yiaH	b3561	0.57	-1.3
3,724,481	+	yiaH	b3561	0.57	-0.9
3,724,482	+	yiaH	b3561	0.57	-0.1
3,724,482	+	yiaH	b3561	0.57	-1.3
3,724,483	+	yiaH	b3561	0.58	-2.3
3,724,483	+	yiaH	b3561	0.58	-0.7
3,724,484	+	yiaH	b3561	0.58	+0.1
3,724,484	+	yiaH	b3561	0.58	+0.0
3,724,484	+	yiaH	b3561	0.58	-0.7
3,724,484	+	yiaH	b3561	0.58	-0.2
3,724,484	+	yiaH	b3561	0.58	-0.5
3,724,484	+	yiaH	b3561	0.58	-0.1
3,724,484	+	yiaH	b3561	0.58	+1.4
3,724,484	+	yiaH	b3561	0.58	+0.4
3,724,484	+	yiaH	b3561	0.58	+0.2
3,724,489	-	yiaH	b3561	0.58	-0.7
3,724,489	-	yiaH	b3561	0.58	+0.8
3,724,489	-	yiaH	b3561	0.58	-2.1
3,724,489	-	yiaH	b3561	0.58	+0.8
3,724,489	-	yiaH	b3561	0.58	+0.3
3,724,489	-	yiaH	b3561	0.58	+1.3
3,724,489	-	yiaH	b3561	0.58	+2.3
3,724,489	-	yiaH	b3561	0.58	+1.4
3,724,489	-	yiaH	b3561	0.58	+0.6
3,724,489	-	yiaH	b3561	0.58	-1.5
3,724,489	-	yiaH	b3561	0.58	+0.7
3,724,489	-	yiaH	b3561	0.58	+1.0
3,724,491	+	yiaH	b3561	0.58	-1.1
3,724,492	+	yiaH	b3561	0.58	-0.7
3,724,492	-	yiaH	b3561	0.58	+2.4
3,724,492	-	yiaH	b3561	0.58	+0.0
3,724,492	-	yiaH	b3561	0.58	+1.4
3,724,492	-	yiaH	b3561	0.58	+0.1
3,724,492	-	yiaH	b3561	0.58	+0.3
3,724,492	-	yiaH	b3561	0.58	+0.0
3,724,492	-	yiaH	b3561	0.58	-0.9
3,724,492	-	yiaH	b3561	0.58	+0.2
3,724,492	-	yiaH	b3561	0.58	+0.7
3,724,492	-	yiaH	b3561	0.58	-1.5
3,724,492	-	yiaH	b3561	0.58	-0.2
3,724,492	-	yiaH	b3561	0.58	-0.8
3,724,492	-	yiaH	b3561	0.58	+0.2
3,724,494	+	yiaH	b3561	0.59	+0.4
3,724,494	+	yiaH	b3561	0.59	+0.9
3,724,494	+	yiaH	b3561	0.59	-1.5
3,724,497	-	yiaH	b3561	0.59	+0.7
3,724,501	+	yiaH	b3561	0.59	-1.9
3,724,502	-	yiaH	b3561	0.59	+1.1
3,724,502	-	yiaH	b3561	0.59	+0.1
3,724,504	+	yiaH	b3561	0.60	-1.0
3,724,504	+	yiaH	b3561	0.60	-1.4
3,724,504	+	yiaH	b3561	0.60	-0.1
3,724,504	+	yiaH	b3561	0.60	-0.7
3,724,504	-	yiaH	b3561	0.60	+0.9
3,724,506	+	yiaH	b3561	0.60	+0.0
3,724,506	+	yiaH	b3561	0.60	-0.4
3,724,506	+	yiaH	b3561	0.60	+0.0
3,724,506	+	yiaH	b3561	0.60	-0.5
3,724,506	+	yiaH	b3561	0.60	-2.6
3,724,506	+	yiaH	b3561	0.60	-0.8
3,724,506	+	yiaH	b3561	0.60	-1.0
3,724,506	+	yiaH	b3561	0.60	-0.0
3,724,506	+	yiaH	b3561	0.60	-0.2
3,724,506	+	yiaH	b3561	0.60	-0.5
3,724,506	+	yiaH	b3561	0.60	-0.1
3,724,506	+	yiaH	b3561	0.60	-0.1
3,724,506	+	yiaH	b3561	0.60	-0.1
3,724,506	+	yiaH	b3561	0.60	-0.4
3,724,506	+	yiaH	b3561	0.60	-0.0
3,724,508	+	yiaH	b3561	0.60	-0.5
3,724,508	+	yiaH	b3561	0.60	-0.5
3,724,515	+	yiaH	b3561	0.61	+0.2
3,724,515	+	yiaH	b3561	0.61	+0.6
3,724,518	+	yiaH	b3561	0.61	+0.2
3,724,518	+	yiaH	b3561	0.61	-0.6
3,724,518	+	yiaH	b3561	0.61	-0.9
3,724,518	+	yiaH	b3561	0.61	-0.4
3,724,518	+	yiaH	b3561	0.61	-0.2
3,724,524	+	yiaH	b3561	0.62	-1.1
3,724,524	+	yiaH	b3561	0.62	-0.3
3,724,524	+	yiaH	b3561	0.62	+0.1
3,724,524	+	yiaH	b3561	0.62	-0.2
3,724,524	+	yiaH	b3561	0.62	-0.3
3,724,524	+	yiaH	b3561	0.62	-0.5
3,724,524	+	yiaH	b3561	0.62	+0.2
3,724,526	-	yiaH	b3561	0.62	+0.5
3,724,528	-	yiaH	b3561	0.62	-1.4
3,724,529	+	yiaH	b3561	0.62	-0.3
3,724,531	+	yiaH	b3561	0.62	-2.0
3,724,532	-	yiaH	b3561	0.62	+1.8
3,724,539	+	yiaH	b3561	0.63	+0.3
3,724,539	+	yiaH	b3561	0.63	-0.5
3,724,547	-	yiaH	b3561	0.64	+1.3
3,724,576	+	yiaH	b3561	0.67	-1.7
3,724,576	+	yiaH	b3561	0.67	-0.0
3,724,581	-	yiaH	b3561	0.67	+2.6
3,724,583	+	yiaH	b3561	0.68	+0.0
3,724,583	+	yiaH	b3561	0.68	-0.5
3,724,610	+	yiaH	b3561	0.70	-0.0
3,724,612	+	yiaH	b3561	0.70	-0.0
3,724,612	+	yiaH	b3561	0.70	-0.5
3,724,621	+	yiaH	b3561	0.71	-0.2
3,724,621	-	yiaH	b3561	0.71	-1.3
3,724,621	-	yiaH	b3561	0.71	+0.0
3,724,624	-	yiaH	b3561	0.72	+0.1
3,724,624	-	yiaH	b3561	0.72	+1.2
3,724,625	+	yiaH	b3561	0.72	+0.5
3,724,662	+	yiaH	b3561	0.76	-0.5
3,724,662	+	yiaH	b3561	0.76	-0.1
3,724,668	-	yiaH	b3561	0.76	+1.0
3,724,682	+	yiaH	b3561	0.78	-1.2
3,724,682	+	yiaH	b3561	0.78	-1.8
3,724,686	+	yiaH	b3561	0.78	-0.5
3,724,686	+	yiaH	b3561	0.78	-0.6
3,724,686	+	yiaH	b3561	0.78	-0.2
3,724,691	+	yiaH	b3561	0.78	-0.4
3,724,697	+	yiaH	b3561	0.79	-1.5
3,724,712	+	yiaH	b3561	0.81	-0.3
3,724,725	+	yiaH	b3561	0.82	-0.2
3,724,725	+	yiaH	b3561	0.82	+0.1
3,724,735	+	yiaH	b3561	0.83	-0.4
3,724,735	+	yiaH	b3561	0.83	+0.0
3,724,746	-	yiaH	b3561	0.84	+0.7
3,724,746	-	yiaH	b3561	0.84	-1.9
3,724,756	+	yiaH	b3561	0.85	+0.5
3,724,756	+	yiaH	b3561	0.85	+0.6
3,724,763	+	yiaH	b3561	0.86	-0.6
3,724,763	+	yiaH	b3561	0.86	-2.9
3,724,763	+	yiaH	b3561	0.86	-0.3
3,724,769	+	yiaH	b3561	0.86	-0.7
3,724,771	+	yiaH	b3561	0.86	-0.8
3,724,850	+				-1.4
3,724,850	+				-0.6
3,724,859	+				-0.1
3,724,859	+				-0.5
3,724,859	+				-0.7
3,724,860	+				-1.8
3,724,860	+				-0.3
3,724,869	+				-0.1
3,724,887	+				-1.3
3,724,901	+				-0.6
3,724,901	+				+0.3
3,724,901	+				+0.0
3,724,904	+				-0.6
3,724,911	+				-2.2
3,724,911	+				-1.2
3,724,915	+				-1.2
3,724,916	+				-0.2
3,724,916	+				+0.3
3,724,920	+				+0.9
3,724,920	+				-0.1
3,724,920	+				+0.2
3,724,920	+				+0.8
3,724,920	+				+1.7
3,724,920	+				+0.1
3,724,920	+				+0.5
3,724,921	+				+1.1
3,724,921	+				-2.8
3,724,921	+				+0.2
3,724,921	+				-2.2
3,724,928	-				+3.0
3,724,928	-				+3.0
3,724,928	-				+4.0
3,724,928	-				+3.0
3,724,930	+				+1.2
3,724,930	+				-0.6
3,724,930	+				-0.8
3,724,934	+				+1.0
3,724,934	+				+0.7
3,724,935	+				+2.0
3,724,935	+				+2.3
3,724,953	+				+0.4
3,724,961	+				-1.5
3,724,961	-				+2.5
3,724,961	-				-0.2
3,724,996	+	yiaA	b3562	0.11	+0.2
3,725,004	-	yiaA	b3562	0.13	+0.9
3,725,004	-	yiaA	b3562	0.13	+1.4
3,725,027	+	yiaA	b3562	0.18	-0.1
3,725,032	-	yiaA	b3562	0.19	+0.5
3,725,035	-	yiaA	b3562	0.20	+0.2
3,725,035	-	yiaA	b3562	0.20	-0.6
3,725,035	-	yiaA	b3562	0.20	+0.2
3,725,037	+	yiaA	b3562	0.21	+1.0
3,725,037	+	yiaA	b3562	0.21	+1.0
3,725,037	+	yiaA	b3562	0.21	+3.0
3,725,040	-	yiaA	b3562	0.21	+0.7
3,725,050	-	yiaA	b3562	0.24	+0.5
3,725,057	-	yiaA	b3562	0.25	+0.3
3,725,057	-	yiaA	b3562	0.25	+0.4
3,725,090	+	yiaA	b3562	0.33	+2.0
3,725,090	+	yiaA	b3562	0.33	-2.0
3,725,090	+	yiaA	b3562	0.33	+0.4
3,725,103	-	yiaA	b3562	0.36	+0.7
3,725,105	+	yiaA	b3562	0.36	+2.0
3,725,105	+	yiaA	b3562	0.36	+0.2
3,725,108	-	yiaA	b3562	0.37	-0.5
3,725,108	-	yiaA	b3562	0.37	+0.3
3,725,108	-	yiaA	b3562	0.37	+0.8
3,725,108	-	yiaA	b3562	0.37	+0.5
3,725,108	-	yiaA	b3562	0.37	+0.6
3,725,108	-	yiaA	b3562	0.37	+1.0
3,725,108	-	yiaA	b3562	0.37	-0.6
3,725,113	-	yiaA	b3562	0.38	-1.1
3,725,113	-	yiaA	b3562	0.38	+0.3
3,725,113	-	yiaA	b3562	0.38	+0.1
3,725,113	-	yiaA	b3562	0.38	+0.9
3,725,113	-	yiaA	b3562	0.38	+0.3
3,725,113	-	yiaA	b3562	0.38	+0.2
3,725,115	-	yiaA	b3562	0.38	-0.2
3,725,120	+	yiaA	b3562	0.39	-1.2
3,725,120	+	yiaA	b3562	0.39	+0.6
3,725,128	-	yiaA	b3562	0.41	-0.2
3,725,128	-	yiaA	b3562	0.41	+0.2
3,725,136	-	yiaA	b3562	0.43	+0.6
3,725,190	-	yiaA	b3562	0.55	+1.0
3,725,190	-	yiaA	b3562	0.55	+0.6
3,725,190	-	yiaA	b3562	0.55	+0.8
3,725,190	-	yiaA	b3562	0.55	-1.0
3,725,190	-	yiaA	b3562	0.55	-0.1
3,725,190	-	yiaA	b3562	0.55	+1.0
3,725,190	-	yiaA	b3562	0.55	+1.2
3,725,190	-	yiaA	b3562	0.55	+0.1
3,725,190	-	yiaA	b3562	0.55	+0.9
3,725,190	-	yiaA	b3562	0.55	+0.1
3,725,191	-	yiaA	b3562	0.56	-1.3
3,725,191	-	yiaA	b3562	0.56	-1.6
3,725,191	-	yiaA	b3562	0.56	+0.6
3,725,193	-	yiaA	b3562	0.56	+0.7
3,725,196	-	yiaA	b3562	0.57	-0.1
3,725,196	-	yiaA	b3562	0.57	+0.7
3,725,196	-	yiaA	b3562	0.57	-0.5
3,725,196	-	yiaA	b3562	0.57	+0.4
3,725,207	+	yiaA	b3562	0.59	+3.0
3,725,215	-	yiaA	b3562	0.61	+1.1
3,725,217	-	yiaA	b3562	0.62	-0.4
3,725,227	-	yiaA	b3562	0.64	-0.7
3,725,227	-	yiaA	b3562	0.64	-0.9
3,725,246	-	yiaA	b3562	0.68	+0.4
3,725,284	-	yiaA	b3562	0.77	+1.0
3,725,289	-	yiaA	b3562	0.78	+0.7
3,725,290	-	yiaA	b3562	0.78	+0.9
3,725,290	-	yiaA	b3562	0.78	+1.1
3,725,292	-	yiaA	b3562	0.79	+0.3
3,725,293	+	yiaA	b3562	0.79	+3.0
3,725,297	-	yiaA	b3562	0.80	+0.2
3,725,301	-	yiaA	b3562	0.81	-0.1
3,725,301	-	yiaA	b3562	0.81	+0.6
3,725,302	-	yiaA	b3562	0.81	+0.7
3,725,302	-	yiaA	b3562	0.81	-0.7
3,725,303	-	yiaA	b3562	0.81	-0.1
3,725,303	-	yiaA	b3562	0.81	+0.8
3,725,303	-	yiaA	b3562	0.81	+1.4
3,725,303	-	yiaA	b3562	0.81	+1.6
3,725,311	-	yiaA	b3562	0.83	+0.3
3,725,312	+	yiaA	b3562	0.83	+0.4
3,725,315	-	yiaA	b3562	0.84	+1.5
3,725,315	-	yiaA	b3562	0.84	+0.5
3,725,317	+	yiaA	b3562	0.84	+2.0
3,725,327	+	yiaA	b3562	0.87	+3.0
3,725,327	+	yiaA	b3562	0.87	+3.0
3,725,327	-	yiaA	b3562	0.87	+1.5
3,725,330	-	yiaA	b3562	0.87	+0.4
3,725,330	-	yiaA	b3562	0.87	+2.0
3,725,330	-	yiaA	b3562	0.87	-0.6
3,725,330	-	yiaA	b3562	0.87	+0.6
3,725,332	+	yiaA	b3562	0.88	+0.7
3,725,332	+	yiaA	b3562	0.88	+1.4
3,725,334	+	yiaA	b3562	0.88	+3.0
3,725,334	+	yiaA	b3562	0.88	-0.1
3,725,339	+	yiaA	b3562	0.89	+3.0
3,725,339	+	yiaA	b3562	0.89	+2.0
3,725,342	+				+0.2
3,725,342	+				+0.4
3,725,342	+				+3.0
3,725,342	-				+1.2
3,725,344	+				+0.0
3,725,346	+				+3.0
3,725,352	-				+1.2
3,725,392	-				-0.6
3,725,392	-				+1.4
3,725,395	-				+3.0
3,725,408	+				+3.0
3,725,414	-				+0.6
3,725,418	+				+3.0
3,725,426	-				+0.1
3,725,426	-				+0.4
3,725,426	-				+2.4
3,725,426	-				+2.2
3,725,426	-				-1.6
3,725,426	-				+1.8
3,725,426	-				-0.5
3,725,427	+				+3.0
3,725,427	+				+2.0
3,725,429	-				-0.1
3,725,435	-				+0.1
3,725,435	-				+1.2
3,725,435	-				+0.8
3,725,435	-				+0.8
3,725,435	-				-0.9
3,725,435	-				+0.6
3,725,435	-				+0.1
3,725,436	-				+0.8
3,725,436	-				-0.2
3,725,436	-				+0.9
3,725,478	-	yiaB	b3563	0.14	+0.3
3,725,478	-	yiaB	b3563	0.14	+1.3
3,725,484	+	yiaB	b3563	0.16	+2.7
3,725,493	-	yiaB	b3563	0.18	+1.7
3,725,506	+	yiaB	b3563	0.22	+0.2
3,725,535	+	yiaB	b3563	0.31	+0.7
3,725,537	+	yiaB	b3563	0.31	-1.2
3,725,555	-	yiaB	b3563	0.37	+1.0
3,725,578	+	yiaB	b3563	0.43	-0.5
3,725,578	+	yiaB	b3563	0.43	+1.0
3,725,647	+	yiaB	b3563	0.63	+3.4
3,725,647	+	yiaB	b3563	0.63	+0.4
3,725,684	+	yiaB	b3563	0.74	+0.9
3,725,688	-	yiaB	b3563	0.75	+0.6
3,725,695	+	yiaB	b3563	0.77	+1.2
3,725,695	+	yiaB	b3563	0.77	-0.1
3,725,695	+	yiaB	b3563	0.77	+1.4
3,725,697	+	yiaB	b3563	0.78	-2.7
3,725,697	+	yiaB	b3563	0.78	-0.5
3,725,697	-	yiaB	b3563	0.78	+1.7
3,725,703	-	yiaB	b3563	0.80	+1.4
3,725,703	-	yiaB	b3563	0.80	+4.3
3,725,703	-	yiaB	b3563	0.80	+1.4
3,725,703	-	yiaB	b3563	0.80	+0.6
3,725,705	-	yiaB	b3563	0.80	-0.3
3,725,705	-	yiaB	b3563	0.80	+0.7
3,725,706	-	yiaB	b3563	0.81	+0.0
3,725,719	-	yiaB	b3563	0.85	+0.5
3,725,721	-	yiaB	b3563	0.85	+2.1
3,725,721	-	yiaB	b3563	0.85	+2.0
3,725,726	-	yiaB	b3563	0.87	+0.1
3,725,726	-	yiaB	b3563	0.87	+0.3
3,725,726	-	yiaB	b3563	0.87	+1.6
3,725,726	-	yiaB	b3563	0.87	+0.4
3,725,747	-				+1.6
3,725,766	+				-1.6
3,725,766	+				-0.0
3,725,774	-				+1.2
3,725,777	+				+0.0
3,725,777	+				-2.9
3,725,777	+				+0.4
3,725,778	+				+0.1
3,725,778	+				-0.7
3,725,783	-				-0.3
3,725,784	+				+0.5
3,725,793	-				+0.6
3,725,798	+				-0.6
3,725,798	+				-0.6
3,725,798	+				+0.2
3,725,799	+				-0.0
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3,725,809	+				-0.8
3,725,921	+				+3.0
3,725,928	-				+0.2
3,725,928	-				+1.0
3,725,929	-				+1.0
3,725,933	-				+0.6
3,725,938	-				+0.3
3,725,939	-				+0.6
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3,725,939	-				+1.5
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3,726,036	-				-0.1
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3,726,107	+	xylB	b3564	0.11	-0.5
3,726,114	+	xylB	b3564	0.12	+0.3
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3,726,286	-	xylB	b3564	0.24	-0.2
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3,726,307	-	xylB	b3564	0.25	-0.0
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3,726,387	-	xylB	b3564	0.31	+0.3
3,726,448	-	xylB	b3564	0.35	+0.2
3,726,474	-	xylB	b3564	0.37	-0.5
3,726,479	-	xylB	b3564	0.37	-0.5
3,726,506	-	xylB	b3564	0.39	+1.7
3,726,591	+	xylB	b3564	0.45	-0.8
3,726,653	+	xylB	b3564	0.49	-0.6
3,726,653	+	xylB	b3564	0.49	-0.8
3,726,701	-	xylB	b3564	0.52	+0.6
3,726,730	-	xylB	b3564	0.54	+0.5