Strain Fitness in Escherichia coli BW25113 around b3119

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
3,264,415	-	tdcA	b3118	0.28	-3.2
3,264,419	-	tdcA	b3118	0.29	-0.6
3,264,429	-	tdcA	b3118	0.30	+0.1
3,264,429	-	tdcA	b3118	0.30	-0.8
3,264,429	-	tdcA	b3118	0.30	-0.5
3,264,443	+	tdcA	b3118	0.31	+2.9
3,264,449	-	tdcA	b3118	0.32	+0.5
3,264,458	-	tdcA	b3118	0.33	+1.2
3,264,458	-	tdcA	b3118	0.33	-2.1
3,264,462	+	tdcA	b3118	0.33	+1.3
3,264,465	+	tdcA	b3118	0.34	+0.7
3,264,470	-	tdcA	b3118	0.34	-1.0
3,264,470	-	tdcA	b3118	0.34	+0.0
3,264,476	-	tdcA	b3118	0.35	-0.3
3,264,476	-	tdcA	b3118	0.35	-0.6
3,264,485	-	tdcA	b3118	0.36	+2.1
3,264,496	-	tdcA	b3118	0.37	+0.4
3,264,503	-	tdcA	b3118	0.38	+1.7
3,264,507	+	tdcA	b3118	0.38	+0.4
3,264,518	-	tdcA	b3118	0.39	+0.5
3,264,543	+	tdcA	b3118	0.42	+1.9
3,264,543	+	tdcA	b3118	0.42	-1.5
3,264,545	-	tdcA	b3118	0.42	+0.3
3,264,556	-	tdcA	b3118	0.43	-0.7
3,264,560	+	tdcA	b3118	0.44	+0.7
3,264,560	+	tdcA	b3118	0.44	-0.1
3,264,560	+	tdcA	b3118	0.44	+1.3
3,264,563	-	tdcA	b3118	0.44	-0.9
3,264,563	-	tdcA	b3118	0.44	-1.1
3,264,573	-	tdcA	b3118	0.45	+1.5
3,264,573	-	tdcA	b3118	0.45	-0.0
3,264,573	-	tdcA	b3118	0.45	-0.3
3,264,573	-	tdcA	b3118	0.45	+0.4
3,264,573	-	tdcA	b3118	0.45	-0.1
3,264,576	+	tdcA	b3118	0.45	-0.6
3,264,584	-	tdcA	b3118	0.46	-0.3
3,264,584	-	tdcA	b3118	0.46	-0.4
3,264,584	-	tdcA	b3118	0.46	+1.0
3,264,624	+	tdcA	b3118	0.51	+0.2
3,264,678	+	tdcA	b3118	0.56	+0.9
3,264,683	+	tdcA	b3118	0.57	-1.5
3,264,702	-	tdcA	b3118	0.59	+0.3
3,264,714	+	tdcA	b3118	0.60	+0.3
3,264,714	+	tdcA	b3118	0.60	-0.5
3,264,723	+	tdcA	b3118	0.61	-0.6
3,264,724	+	tdcA	b3118	0.61	+2.9
3,264,724	+	tdcA	b3118	0.61	+1.2
3,264,734	+	tdcA	b3118	0.62	-0.0
3,264,734	+	tdcA	b3118	0.62	+0.7
3,264,745	+	tdcA	b3118	0.63	+0.4
3,264,745	+	tdcA	b3118	0.63	+0.5
3,264,745	+	tdcA	b3118	0.63	-0.2
3,264,752	-	tdcA	b3118	0.64	-1.5
3,264,757	+	tdcA	b3118	0.65	+0.3
3,264,780	-	tdcA	b3118	0.67	+2.5
3,264,780	-	tdcA	b3118	0.67	-1.1
3,264,794	+	tdcA	b3118	0.69	+1.2
3,264,794	+	tdcA	b3118	0.69	+0.9
3,264,794	+	tdcA	b3118	0.69	-0.4
3,264,794	+	tdcA	b3118	0.69	+0.3
3,264,794	+	tdcA	b3118	0.69	+0.4
3,264,813	+	tdcA	b3118	0.71	+0.9
3,264,813	-	tdcA	b3118	0.71	-0.6
3,264,814	+	tdcA	b3118	0.71	+0.7
3,264,814	+	tdcA	b3118	0.71	+0.1
3,264,881	+	tdcA	b3118	0.78	+0.8
3,264,903	-	tdcA	b3118	0.80	+2.9
3,264,979	-	tdcA	b3118	0.88	+0.9
3,264,994	-				-1.0
3,265,039	+				+1.9
3,265,044	-				-1.5
3,265,047	-				+3.2
3,265,047	-				+0.5
3,265,054	-				-1.3
3,265,055	-				+0.1
3,265,058	-				+1.9
3,265,544	-	tdcR	b3119	0.65	+1.3
3,265,544	-	tdcR	b3119	0.65	+0.3
3,265,594	-	tdcR	b3119	0.88	+0.1
3,265,658	-				-1.8
3,265,658	-				+0.2
3,265,671	-				-0.2
3,265,673	+				-1.0
3,265,698	+				-1.0
3,265,702	-				-0.2
3,265,708	-				-0.7
3,265,708	-				+1.6
3,265,743	-				-0.2
3,265,743	-				+1.2
3,265,745	+				+0.2
3,265,746	+				-0.1
3,265,746	+				-1.1
3,265,746	+				+0.2
3,265,746	+				-0.5
3,265,746	+				-0.3
3,265,751	+				+0.1
3,265,751	+				-0.0
3,265,751	+				-0.3
3,265,754	-				-0.7
3,265,758	+				+1.2
3,265,759	-				+0.0
3,265,759	-				+0.4
3,265,759	-				+0.6
3,265,763	-				+0.3
3,265,763	-				+2.9
3,265,768	-				-1.4
3,265,778	-				-0.3
3,265,778	-				-0.6
3,265,798	+				+0.2
3,265,798	+				-0.4
3,265,798	+				-1.2
3,265,806	-				+2.5
3,265,842	+				-1.5
3,265,881	-				+2.9
3,265,914	+				-0.5
3,265,914	+				-0.8
3,266,009	-	yhaB	b3120	0.25	+2.9
3,266,085	-	yhaB	b3120	0.39	+2.9
3,266,231	-	yhaB	b3120	0.66	-1.9
3,266,231	-				-0.7
3,266,324	+	yhaB	b3120	0.83	-0.4
3,266,326	+	yhaB	b3120	0.83	-0.5
3,266,334	+	yhaB	b3120	0.85	+2.9
3,266,334	+	yhaB	b3120	0.85	+2.9