Strain Fitness in Escherichia coli BW25113 around b2789

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
2,917,770	-	gudX	b2788	0.26	+0.3
2,917,770	-	gudX	b2788	0.26	-0.4
2,917,807	+	gudX	b2788	0.28	-1.0
2,917,860	+	gudX	b2788	0.32	-0.5
2,917,902	+	gudX	b2788	0.35	+0.4
2,917,917	+	gudX	b2788	0.36	-0.2
2,917,925	-	gudX	b2788	0.37	-0.4
2,917,981	-	gudX	b2788	0.41	-0.7
2,917,991	-	gudX	b2788	0.42	-0.5
2,917,991	-	gudX	b2788	0.42	-2.1
2,918,009	-	gudX	b2788	0.43	-0.0
2,918,009	-	gudX	b2788	0.43	+0.2
2,918,014	-	gudX	b2788	0.44	-0.4
2,918,014	-	gudX	b2788	0.44	+0.2
2,918,059	-	gudX	b2788	0.47	+0.0
2,918,059	-	gudX	b2788	0.47	-0.1
2,918,059	-	gudX	b2788	0.47	+0.2
2,918,059	-	gudX	b2788	0.47	-1.6
2,918,059	-	gudX	b2788	0.47	-0.0
2,918,071	+	gudX	b2788	0.48	+1.0
2,918,244	-	gudX	b2788	0.61	+1.5
2,918,244	-	gudX	b2788	0.61	-0.2
2,918,260	-	gudX	b2788	0.62	+0.0
2,918,333	-	gudX	b2788	0.67	-1.0
2,918,475	-	gudX	b2788	0.78	-2.2
2,918,475	-	gudX	b2788	0.78	-0.7
2,918,513	-	gudX	b2788	0.81	+0.6
2,918,513	-	gudX	b2788	0.81	+0.2
2,918,550	+	gudX	b2788	0.84	+0.0
2,918,550	+	gudX	b2788	0.84	+0.0
2,918,738	-				+0.3
2,918,751	+				+0.3
2,918,762	-				-0.0
2,918,783	-				-0.4
2,918,843	-				+0.6
2,918,843	-				-0.3
2,918,848	+				+0.5
2,918,869	-				+0.9
2,918,869	-				+1.2
2,918,884	-				+0.2
2,918,933	+	gudP	b2789	0.12	-0.1
2,918,933	+	gudP	b2789	0.12	-0.0
2,919,044	-	gudP	b2789	0.20	+0.3
2,919,062	-	gudP	b2789	0.22	-2.4
2,919,098	-	gudP	b2789	0.24	-0.1
2,919,140	+	gudP	b2789	0.27	-0.1
2,919,148	-	gudP	b2789	0.28	-0.5
2,919,160	-	gudP	b2789	0.29	-1.1
2,919,170	-	gudP	b2789	0.30	-0.2
2,919,263	-	gudP	b2789	0.36	+0.1
2,919,319	+	gudP	b2789	0.41	-0.0
2,919,319	+	gudP	b2789	0.41	+0.2
2,919,332	+	gudP	b2789	0.42	-0.0
2,919,332	+	gudP	b2789	0.42	-1.2
2,919,340	-	gudP	b2789	0.42	+0.1
2,919,342	-	gudP	b2789	0.42	-1.5
2,919,345	-	gudP	b2789	0.42	+0.3
2,919,345	-	gudP	b2789	0.42	-0.8
2,919,374	-	gudP	b2789	0.45	+0.2
2,919,441	-	gudP	b2789	0.50	-0.6
2,919,441	-	gudP	b2789	0.50	-0.1
2,919,443	+	gudP	b2789	0.50	-0.8
2,919,443	+	gudP	b2789	0.50	-2.8
2,919,451	-	gudP	b2789	0.50	+0.3
2,919,453	+	gudP	b2789	0.50	-0.0
2,919,453	+	gudP	b2789	0.50	-1.4
2,919,474	+	gudP	b2789	0.52	+1.0
2,919,474	+	gudP	b2789	0.52	+0.3
2,919,802	-	gudP	b2789	0.76	-1.2
2,919,849	-	gudP	b2789	0.80	-1.2
2,919,899	+	gudP	b2789	0.83	-1.7
2,919,996	+				-0.1
2,920,069	-				+0.3
2,920,069	-				-1.3
2,920,094	-				+0.1
2,920,107	+				-0.0
2,920,122	+				+0.5
2,920,122	+				+0.4
2,920,166	+				+0.1
2,920,293	-				-0.1
2,920,368	-				-0.1
2,920,385	+				-0.4
2,920,558	-				+0.1
2,920,568	-				-0.0
2,920,568	-				+0.0
2,920,652	+	yqcA	b2790	0.21	+0.4
2,920,652	+	yqcA	b2790	0.21	+0.8
2,920,816	+	yqcA	b2790	0.58	-0.1
2,920,818	-	yqcA	b2790	0.58	-0.5
2,920,818	-	yqcA	b2790	0.58	+0.3
2,920,831	+	yqcA	b2790	0.61	-0.5
2,920,864	+	yqcA	b2790	0.68	+0.9
2,920,864	+	yqcA	b2790	0.68	-0.1
2,920,917	+	yqcA	b2790	0.80	-1.0
2,920,961	+	yqcA	b2790	0.90	-1.8
2,920,995	+				+0.2
2,921,038	+				-0.7
2,921,042	+				-1.4
2,921,050	-				-1.7
2,921,053	+				+0.5