Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfcA and mepA overlap by 1 nucleotides mepA and aroC are separated by 3 nucleotides aroC and yfcB are separated by 34 nucleotides
b2327: yfcA - conserved inner membrane protein (NCBI), at 2,442,773 to 2,443,582
yfcA
b2328: mepA - penicillin-insensitive murein endopeptidase (NCBI), at 2,443,582 to 2,444,406
mepA
b2329: aroC - chorismate synthase (NCBI), at 2,444,410 to 2,445,495
aroC
b2330: yfcB - putative adenine-specific methylase (VIMSS), at 2,445,530 to 2,446,462
yfcB
Position (kb)
2444
2445
2446 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2443.700 kb on - strand, within mepA at 2443.700 kb on - strand, within mepA at 2443.705 kb on + strand, within mepA at 2443.770 kb on + strand, within mepA at 2443.778 kb on - strand, within mepA at 2443.778 kb on - strand, within mepA at 2443.782 kb on - strand, within mepA at 2443.797 kb on - strand, within mepA at 2443.797 kb on - strand, within mepA at 2443.817 kb on - strand, within mepA at 2443.817 kb on - strand, within mepA at 2443.897 kb on + strand, within mepA at 2444.082 kb on - strand, within mepA at 2444.245 kb on - strand, within mepA at 2444.245 kb on - strand, within mepA at 2444.256 kb on + strand, within mepA at 2444.552 kb on - strand, within aroC at 2444.844 kb on + strand, within aroC at 2444.866 kb on - strand, within aroC at 2444.923 kb on - strand, within aroC at 2444.997 kb on - strand, within aroC at 2444.997 kb on - strand, within aroC at 2445.075 kb on + strand, within aroC at 2445.075 kb on + strand, within aroC at 2445.180 kb on + strand, within aroC at 2445.213 kb on + strand, within aroC at 2445.213 kb on + strand, within aroC at 2445.219 kb on - strand, within aroC at 2445.219 kb on - strand, within aroC at 2445.244 kb on + strand, within aroC at 2445.326 kb on + strand, within aroC at 2445.326 kb on + strand, within aroC at 2445.337 kb on - strand, within aroC at 2445.337 kb on - strand, within aroC at 2445.487 kb on - strand at 2445.492 kb on - strand at 2445.514 kb on - strand at 2445.514 kb on - strand at 2445.577 kb on + strand at 2445.660 kb on - strand, within yfcB at 2445.661 kb on + strand, within yfcB at 2445.661 kb on + strand, within yfcB at 2445.767 kb on - strand, within yfcB at 2446.057 kb on - strand, within yfcB at 2446.131 kb on + strand, within yfcB at 2446.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 2,443,700 - mepA b2328 0.14 -0.0 2,443,700 - mepA b2328 0.14 -0.1 2,443,705 + mepA b2328 0.15 +0.3 2,443,770 + mepA b2328 0.23 -1.3 2,443,778 - mepA b2328 0.24 -0.1 2,443,778 - mepA b2328 0.24 -0.7 2,443,782 - mepA b2328 0.24 +0.3 2,443,797 - mepA b2328 0.26 -0.4 2,443,797 - mepA b2328 0.26 +0.4 2,443,817 - mepA b2328 0.28 +0.6 2,443,817 - mepA b2328 0.28 +0.4 2,443,897 + mepA b2328 0.38 +0.5 2,444,082 - mepA b2328 0.61 +1.0 2,444,245 - mepA b2328 0.80 +1.3 2,444,245 - mepA b2328 0.80 +0.4 2,444,256 + mepA b2328 0.82 +0.7 2,444,552 - aroC b2329 0.13 -2.9 2,444,844 + aroC b2329 0.40 -4.2 2,444,866 - aroC b2329 0.42 -4.7 2,444,923 - aroC b2329 0.47 -2.3 2,444,997 - aroC b2329 0.54 -2.3 2,444,997 - aroC b2329 0.54 -3.5 2,445,075 + aroC b2329 0.61 -2.9 2,445,075 + aroC b2329 0.61 -2.8 2,445,180 + aroC b2329 0.71 -3.2 2,445,213 + aroC b2329 0.74 -2.7 2,445,213 + aroC b2329 0.74 -2.9 2,445,219 - aroC b2329 0.74 -3.5 2,445,219 - aroC b2329 0.74 -3.1 2,445,244 + aroC b2329 0.77 -5.1 2,445,326 + aroC b2329 0.84 -4.8 2,445,326 + aroC b2329 0.84 -4.3 2,445,337 - aroC b2329 0.85 -3.4 2,445,337 - aroC b2329 0.85 -2.8 2,445,487 - -3.1 2,445,492 - -3.9 2,445,514 - -1.2 2,445,514 - -1.1 2,445,577 + +0.0 2,445,660 - yfcB b2330 0.14 -1.0 2,445,661 + yfcB b2330 0.14 +0.0 2,445,661 + yfcB b2330 0.14 +1.6 2,445,767 - yfcB b2330 0.25 +2.1 2,446,057 - yfcB b2330 0.56 +0.4 2,446,131 + yfcB b2330 0.64 -0.9 2,446,369 - -0.2
Or see this region's nucleotide sequence