Strain Fitness in Escherichia coli BW25113 around b2185
Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Ying_sugar7 rep C; time point 3 |
|---|---|---|---|---|---|
| remove | |||||
| 2,279,600 | - | yejH | b2184 | 0.54 | +0.0 |
| 2,279,622 | - | yejH | b2184 | 0.55 | -0.4 |
| 2,279,622 | - | yejH | b2184 | 0.55 | -0.2 |
| 2,279,648 | + | yejH | b2184 | 0.56 | -1.4 |
| 2,279,858 | - | yejH | b2184 | 0.68 | +0.8 |
| 2,279,895 | + | yejH | b2184 | 0.70 | +0.4 |
| 2,279,895 | + | yejH | b2184 | 0.70 | +0.4 |
| 2,279,967 | - | yejH | b2184 | 0.75 | +1.0 |
| 2,280,065 | + | yejH | b2184 | 0.80 | +0.4 |
| 2,280,078 | - | yejH | b2184 | 0.81 | -0.3 |
| 2,280,078 | - | yejH | b2184 | 0.81 | -0.4 |
| 2,280,080 | + | yejH | b2184 | 0.81 | +0.3 |
| 2,280,148 | + | yejH | b2184 | 0.85 | +0.1 |
| 2,280,161 | + | yejH | b2184 | 0.86 | -0.0 |
| 2,280,214 | - | yejH | b2184 | 0.89 | -0.6 |
| 2,280,240 | + | -1.4 | |||
| 2,280,266 | - | -0.2 | |||
| 2,280,943 | + | +0.4 | |||
| 2,281,099 | - | yejK | b2186 | 0.14 | +0.2 |
| 2,281,099 | - | yejK | b2186 | 0.14 | +0.4 |
| 2,281,135 | + | yejK | b2186 | 0.17 | -0.0 |
| 2,281,166 | - | yejK | b2186 | 0.20 | +0.3 |
| 2,281,166 | - | yejK | b2186 | 0.20 | +0.6 |
| 2,281,253 | + | yejK | b2186 | 0.29 | +1.7 |
| 2,281,255 | + | yejK | b2186 | 0.29 | +0.6 |
| 2,281,263 | + | yejK | b2186 | 0.30 | +1.4 |
| 2,281,263 | + | yejK | b2186 | 0.30 | +0.0 |
| 2,281,284 | - | yejK | b2186 | 0.32 | +0.2 |
| 2,281,284 | - | yejK | b2186 | 0.32 | +0.6 |
| 2,281,286 | + | yejK | b2186 | 0.32 | -0.7 |
| 2,281,294 | - | yejK | b2186 | 0.33 | -0.5 |
| 2,281,323 | - | yejK | b2186 | 0.36 | +0.6 |
| 2,281,325 | + | yejK | b2186 | 0.36 | +1.1 |
| 2,281,347 | + | yejK | b2186 | 0.38 | -0.3 |
| 2,281,377 | - | yejK | b2186 | 0.41 | +0.6 |
| 2,281,447 | + | yejK | b2186 | 0.48 | +0.7 |
| 2,281,456 | - | yejK | b2186 | 0.49 | +0.2 |
| 2,281,483 | + | yejK | b2186 | 0.52 | +0.5 |
| 2,281,512 | - | yejK | b2186 | 0.55 | +0.6 |
| 2,281,512 | - | yejK | b2186 | 0.55 | +0.7 |
| 2,281,780 | - | yejK | b2186 | 0.81 | +0.4 |
Or see this region's nucleotide sequence