Strain Fitness in Escherichia coli BW25113 around b2185

Experiment: Ying_sugar7 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyejH and rplY are separated by 124 nucleotidesrplY and yejK are separated by 138 nucleotides b2184: yejH - DNA damage response helicase (yejH or radD) (from data), at 2,278,654 to 2,280,414 yejH b2185: rplY - 50S ribosomal protein L25 (NCBI), at 2,280,539 to 2,280,823 rplY b2186: yejK - nucleoid-associated protein NdpA (NCBI), at 2,280,962 to 2,281,969 yejK Position (kb) 2280 2281Strain fitness (log2 ratio) -1 0 1at 2279.600 kb on - strand, within yejHat 2279.622 kb on - strand, within yejHat 2279.622 kb on - strand, within yejHat 2279.648 kb on + strand, within yejHat 2279.858 kb on - strand, within yejHat 2279.895 kb on + strand, within yejHat 2279.895 kb on + strand, within yejHat 2279.967 kb on - strand, within yejHat 2280.065 kb on + strand, within yejHat 2280.078 kb on - strand, within yejHat 2280.078 kb on - strand, within yejHat 2280.080 kb on + strand, within yejHat 2280.148 kb on + strand, within yejHat 2280.161 kb on + strand, within yejHat 2280.214 kb on - strand, within yejHat 2280.240 kb on + strandat 2280.266 kb on - strandat 2280.943 kb on + strandat 2281.099 kb on - strand, within yejKat 2281.099 kb on - strand, within yejKat 2281.135 kb on + strand, within yejKat 2281.166 kb on - strand, within yejKat 2281.166 kb on - strand, within yejKat 2281.253 kb on + strand, within yejKat 2281.255 kb on + strand, within yejKat 2281.263 kb on + strand, within yejKat 2281.263 kb on + strand, within yejKat 2281.284 kb on - strand, within yejKat 2281.284 kb on - strand, within yejKat 2281.286 kb on + strand, within yejKat 2281.294 kb on - strand, within yejKat 2281.323 kb on - strand, within yejKat 2281.325 kb on + strand, within yejKat 2281.347 kb on + strand, within yejKat 2281.377 kb on - strand, within yejKat 2281.447 kb on + strand, within yejKat 2281.456 kb on - strand, within yejKat 2281.483 kb on + strand, within yejKat 2281.512 kb on - strand, within yejKat 2281.512 kb on - strand, within yejKat 2281.780 kb on - strand, within yejK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
remove
2,279,600 - yejH b2184 0.54 +0.0
2,279,622 - yejH b2184 0.55 -0.4
2,279,622 - yejH b2184 0.55 -0.2
2,279,648 + yejH b2184 0.56 -1.4
2,279,858 - yejH b2184 0.68 +0.8
2,279,895 + yejH b2184 0.70 +0.4
2,279,895 + yejH b2184 0.70 +0.4
2,279,967 - yejH b2184 0.75 +1.0
2,280,065 + yejH b2184 0.80 +0.4
2,280,078 - yejH b2184 0.81 -0.3
2,280,078 - yejH b2184 0.81 -0.4
2,280,080 + yejH b2184 0.81 +0.3
2,280,148 + yejH b2184 0.85 +0.1
2,280,161 + yejH b2184 0.86 -0.0
2,280,214 - yejH b2184 0.89 -0.6
2,280,240 + -1.4
2,280,266 - -0.2
2,280,943 + +0.4
2,281,099 - yejK b2186 0.14 +0.2
2,281,099 - yejK b2186 0.14 +0.4
2,281,135 + yejK b2186 0.17 -0.0
2,281,166 - yejK b2186 0.20 +0.3
2,281,166 - yejK b2186 0.20 +0.6
2,281,253 + yejK b2186 0.29 +1.7
2,281,255 + yejK b2186 0.29 +0.6
2,281,263 + yejK b2186 0.30 +1.4
2,281,263 + yejK b2186 0.30 +0.0
2,281,284 - yejK b2186 0.32 +0.2
2,281,284 - yejK b2186 0.32 +0.6
2,281,286 + yejK b2186 0.32 -0.7
2,281,294 - yejK b2186 0.33 -0.5
2,281,323 - yejK b2186 0.36 +0.6
2,281,325 + yejK b2186 0.36 +1.1
2,281,347 + yejK b2186 0.38 -0.3
2,281,377 - yejK b2186 0.41 +0.6
2,281,447 + yejK b2186 0.48 +0.7
2,281,456 - yejK b2186 0.49 +0.2
2,281,483 + yejK b2186 0.52 +0.5
2,281,512 - yejK b2186 0.55 +0.6
2,281,512 - yejK b2186 0.55 +0.7
2,281,780 - yejK b2186 0.81 +0.4

Or see this region's nucleotide sequence