Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt artM and artQ overlap by 1 nucleotides artQ and artI are separated by 6 nucleotides artI and artP are separated by 17 nucleotides artP and ybjP are separated by 217 nucleotides
b0861: artM - arginine transporter subunit (NCBI), at 900,089 to 900,757
artM
b0862: artQ - arginine transporter subunit (NCBI), at 900,757 to 901,473
artQ
b0863: artI - arginine transporter subunit (NCBI), at 901,480 to 902,211
artI
b0864: artP - arginine transporter subunit (NCBI), at 902,229 to 902,957
artP
b0865: ybjP - predicted lipoprotein (NCBI), at 903,175 to 903,690
ybjP
Position (kb) 901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 900.596 kb on - strand, within artM at 900.596 kb on - strand, within artM at 900.611 kb on - strand, within artM at 900.611 kb on - strand, within artM at 900.706 kb on + strand at 900.873 kb on + strand, within artQ at 901.049 kb on + strand, within artQ at 901.059 kb on + strand, within artQ at 901.088 kb on + strand, within artQ at 901.191 kb on + strand, within artQ at 901.191 kb on + strand, within artQ at 901.555 kb on - strand, within artI at 901.590 kb on - strand, within artI at 901.590 kb on - strand, within artI at 901.669 kb on - strand, within artI at 901.669 kb on - strand, within artI at 901.850 kb on + strand, within artI at 901.850 kb on + strand, within artI at 901.858 kb on + strand, within artI at 901.858 kb on - strand, within artI at 901.907 kb on + strand, within artI at 902.066 kb on - strand, within artI at 902.123 kb on - strand, within artI at 902.123 kb on - strand, within artI at 902.289 kb on + strand at 902.302 kb on - strand, within artP at 902.500 kb on - strand, within artP at 902.632 kb on + strand, within artP at 902.632 kb on + strand, within artP at 902.674 kb on + strand, within artP at 902.940 kb on + strand at 902.940 kb on + strand at 902.972 kb on - strand at 903.109 kb on + strand at 903.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 900,596 - artM b0861 0.76 +0.0 900,596 - artM b0861 0.76 +0.6 900,611 - artM b0861 0.78 -0.8 900,611 - artM b0861 0.78 -1.0 900,706 + -0.3 900,873 + artQ b0862 0.16 +1.0 901,049 + artQ b0862 0.41 +0.3 901,059 + artQ b0862 0.42 +0.4 901,088 + artQ b0862 0.46 -0.3 901,191 + artQ b0862 0.61 -1.1 901,191 + artQ b0862 0.61 -1.2 901,555 - artI b0863 0.10 -3.0 901,590 - artI b0863 0.15 -0.6 901,590 - artI b0863 0.15 -2.2 901,669 - artI b0863 0.26 -1.5 901,669 - artI b0863 0.26 -1.3 901,850 + artI b0863 0.51 -1.6 901,850 + artI b0863 0.51 +0.0 901,858 + artI b0863 0.52 -0.8 901,858 - artI b0863 0.52 -1.6 901,907 + artI b0863 0.58 -1.5 902,066 - artI b0863 0.80 -1.1 902,123 - artI b0863 0.88 -0.9 902,123 - artI b0863 0.88 -1.4 902,289 + -0.0 902,302 - artP b0864 0.10 +0.2 902,500 - artP b0864 0.37 -1.4 902,632 + artP b0864 0.55 +0.1 902,632 + artP b0864 0.55 -0.0 902,674 + artP b0864 0.61 -0.1 902,940 + -0.9 902,940 + -0.8 902,972 - -0.2 903,109 + -0.1 903,109 + +0.5
Or see this region's nucleotide sequence