Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rimK and ybjN are separated by 87 nucleotides ybjN and potF are separated by 350 nucleotides potF and potG are separated by 94 nucleotides
b0852: rimK - ribosomal protein S6 modification protein (NCBI), at 891,190 to 892,092
rimK
b0853: ybjN - predicted oxidoreductase (NCBI), at 892,180 to 892,656
ybjN
b0854: potF - putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 893,007 to 894,119
potF
b0855: potG - ATP-binding component of putrescine transport system (VIMSS), at 894,214 to 895,347
potG
Position (kb) 893
894
895 Strain fitness (log2 ratio) -1
0
1 at 892.020 kb on - strand at 892.167 kb on + strand at 892.206 kb on + strand at 892.244 kb on - strand, within ybjN at 892.284 kb on - strand, within ybjN at 892.284 kb on - strand, within ybjN at 892.304 kb on + strand, within ybjN at 892.389 kb on - strand, within ybjN at 892.389 kb on - strand, within ybjN at 892.411 kb on + strand, within ybjN at 892.411 kb on + strand, within ybjN at 892.524 kb on + strand, within ybjN at 892.550 kb on - strand, within ybjN at 892.609 kb on - strand at 892.609 kb on - strand at 893.167 kb on + strand, within potF at 893.261 kb on + strand, within potF at 893.352 kb on - strand, within potF at 893.362 kb on - strand, within potF at 893.400 kb on + strand, within potF at 893.408 kb on - strand, within potF at 893.408 kb on - strand, within potF at 893.490 kb on - strand, within potF at 893.696 kb on - strand, within potF at 894.044 kb on - strand at 894.044 kb on - strand at 894.323 kb on + strand at 894.396 kb on + strand, within potG at 894.541 kb on - strand, within potG at 894.691 kb on - strand, within potG at 894.746 kb on - strand, within potG at 894.755 kb on + strand, within potG at 894.755 kb on + strand, within potG at 894.797 kb on - strand, within potG at 894.816 kb on + strand, within potG at 894.847 kb on - strand, within potG at 894.877 kb on + strand, within potG at 894.922 kb on + strand, within potG at 894.922 kb on + strand, within potG at 894.929 kb on - strand, within potG at 895.067 kb on + strand, within potG at 895.099 kb on - strand, within potG at 895.099 kb on - strand, within potG
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 892,020 - +1.3 892,167 + +0.1 892,206 + -0.9 892,244 - ybjN b0853 0.13 +0.9 892,284 - ybjN b0853 0.22 +0.5 892,284 - ybjN b0853 0.22 +0.7 892,304 + ybjN b0853 0.26 -0.8 892,389 - ybjN b0853 0.44 +0.3 892,389 - ybjN b0853 0.44 -1.1 892,411 + ybjN b0853 0.48 -1.3 892,411 + ybjN b0853 0.48 -0.5 892,524 + ybjN b0853 0.72 -0.5 892,550 - ybjN b0853 0.78 +0.3 892,609 - -0.4 892,609 - +0.8 893,167 + potF b0854 0.14 +0.8 893,261 + potF b0854 0.23 +0.7 893,352 - potF b0854 0.31 -0.2 893,362 - potF b0854 0.32 +0.9 893,400 + potF b0854 0.35 -0.1 893,408 - potF b0854 0.36 +1.1 893,408 - potF b0854 0.36 +0.6 893,490 - potF b0854 0.43 +0.0 893,696 - potF b0854 0.62 +1.0 894,044 - +0.6 894,044 - +1.2 894,323 + +0.2 894,396 + potG b0855 0.16 +0.5 894,541 - potG b0855 0.29 -0.1 894,691 - potG b0855 0.42 +0.1 894,746 - potG b0855 0.47 +0.8 894,755 + potG b0855 0.48 -0.5 894,755 + potG b0855 0.48 -0.8 894,797 - potG b0855 0.51 +0.9 894,816 + potG b0855 0.53 -0.2 894,847 - potG b0855 0.56 -0.5 894,877 + potG b0855 0.58 +0.4 894,922 + potG b0855 0.62 +0.7 894,922 + potG b0855 0.62 -0.1 894,929 - potG b0855 0.63 +0.6 895,067 + potG b0855 0.75 +0.7 895,099 - potG b0855 0.78 +0.6 895,099 - potG b0855 0.78 +0.8
Or see this region's nucleotide sequence