Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt essD and ybcS overlap by 1 nucleotides ybcS and rzpD overlap by 4 nucleotides rzpD and rzoD overlap by 242 nucleotides rzoD and borD are separated by 90 nucleotides borD and ybcV are separated by 290 nucleotides
b0554: essD - DLP12 prophage; predicted phage lysis protein (NCBI), at 576,621 to 576,836
essD
b0555: ybcS - DLP12 prophage; predicted lysozyme (NCBI), at 576,836 to 577,333
ybcS
b0556: rzpD - DLP12 prophage; predicted murein endopeptidase (NCBI), at 577,330 to 577,791
rzpD
b4510: rzoD - DLP12 prophage; predicted lipoprotein (NCBI), at 577,550 to 577,732
rzoD
b0557: borD - DLP12 prophage; predicted lipoprotein (NCBI), at 577,823 to 578,116
borD
b0558: ybcV - putative an envelop protein (VIMSS), at 578,407 to 578,817
ybcV
Position (kb) 577
578 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 576.443 kb on + strand at 576.446 kb on + strand at 576.464 kb on + strand at 576.464 kb on + strand at 576.470 kb on - strand at 576.472 kb on + strand at 576.472 kb on + strand at 576.472 kb on + strand at 576.475 kb on - strand at 576.480 kb on - strand at 576.515 kb on + strand at 576.525 kb on - strand at 576.525 kb on - strand at 576.531 kb on - strand at 576.538 kb on - strand at 576.538 kb on - strand at 576.539 kb on - strand at 576.539 kb on - strand at 576.541 kb on + strand at 576.541 kb on + strand at 576.551 kb on - strand at 576.551 kb on - strand at 576.561 kb on + strand at 576.561 kb on - strand at 576.563 kb on - strand at 576.563 kb on - strand at 576.611 kb on + strand at 576.626 kb on - strand at 576.640 kb on - strand at 576.640 kb on - strand at 576.645 kb on - strand, within essD at 576.662 kb on - strand, within essD at 576.662 kb on - strand, within essD at 576.670 kb on - strand, within essD at 576.670 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.678 kb on + strand, within essD at 576.680 kb on - strand, within essD at 576.684 kb on - strand, within essD at 576.688 kb on + strand, within essD at 576.691 kb on + strand, within essD at 576.704 kb on + strand, within essD at 576.704 kb on + strand, within essD at 576.712 kb on - strand, within essD at 576.719 kb on + strand, within essD at 576.725 kb on - strand, within essD at 576.725 kb on - strand, within essD at 576.732 kb on + strand, within essD at 576.732 kb on + strand, within essD at 576.739 kb on - strand, within essD at 576.740 kb on - strand, within essD at 576.740 kb on - strand, within essD at 576.744 kb on - strand, within essD at 576.751 kb on + strand, within essD at 576.773 kb on - strand, within essD at 576.819 kb on + strand at 576.819 kb on + strand at 576.826 kb on - strand at 576.839 kb on + strand at 576.855 kb on + strand at 576.869 kb on + strand at 576.869 kb on + strand at 576.891 kb on + strand, within ybcS at 576.891 kb on + strand, within ybcS at 576.902 kb on + strand, within ybcS at 576.920 kb on + strand, within ybcS at 576.932 kb on + strand, within ybcS at 576.932 kb on + strand, within ybcS at 576.940 kb on - strand, within ybcS at 576.940 kb on - strand, within ybcS at 576.941 kb on - strand, within ybcS at 576.941 kb on - strand, within ybcS at 576.942 kb on + strand, within ybcS at 576.956 kb on + strand, within ybcS at 576.956 kb on - strand, within ybcS at 576.975 kb on + strand, within ybcS at 576.986 kb on + strand, within ybcS at 576.986 kb on + strand, within ybcS at 576.989 kb on - strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.994 kb on - strand, within ybcS at 576.994 kb on - strand, within ybcS at 576.994 kb on - strand, within ybcS at 577.024 kb on - strand, within ybcS at 577.057 kb on + strand, within ybcS at 577.072 kb on + strand, within ybcS at 577.077 kb on - strand, within ybcS at 577.117 kb on + strand, within ybcS at 577.145 kb on - strand, within ybcS at 577.146 kb on + strand, within ybcS at 577.146 kb on + strand, within ybcS at 577.156 kb on - strand, within ybcS at 577.205 kb on + strand, within ybcS at 577.227 kb on + strand, within ybcS at 577.232 kb on + strand, within ybcS at 577.243 kb on - strand, within ybcS at 577.243 kb on - strand, within ybcS at 577.285 kb on - strand at 577.337 kb on + strand at 577.337 kb on + strand at 577.384 kb on - strand, within rzpD at 577.384 kb on - strand, within rzpD at 577.386 kb on + strand, within rzpD at 577.394 kb on - strand, within rzpD at 577.394 kb on - strand, within rzpD at 577.405 kb on - strand, within rzpD at 577.408 kb on - strand, within rzpD at 577.662 kb on + strand at 577.721 kb on + strand at 577.728 kb on + strand at 577.767 kb on + strand at 577.767 kb on + strand at 577.786 kb on + strand at 577.786 kb on + strand at 577.787 kb on + strand at 577.791 kb on + strand at 577.794 kb on - strand at 577.797 kb on + strand at 577.798 kb on + strand at 577.799 kb on - strand at 577.804 kb on - strand at 577.814 kb on + strand at 577.830 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.872 kb on + strand, within borD at 577.911 kb on + strand, within borD at 578.011 kb on - strand, within borD at 578.018 kb on - strand, within borD at 578.018 kb on - strand, within borD at 578.021 kb on + strand, within borD at 578.025 kb on + strand, within borD at 578.028 kb on - strand, within borD at 578.031 kb on - strand, within borD at 578.049 kb on + strand, within borD at 578.049 kb on + strand, within borD at 578.050 kb on - strand, within borD at 578.050 kb on - strand, within borD at 578.062 kb on - strand, within borD at 578.062 kb on - strand, within borD at 578.067 kb on + strand, within borD at 578.070 kb on - strand, within borD at 578.070 kb on - strand, within borD at 578.071 kb on + strand, within borD at 578.071 kb on + strand, within borD at 578.081 kb on - strand, within borD at 578.081 kb on - strand, within borD at 578.089 kb on + strand at 578.097 kb on - strand at 578.097 kb on - strand at 578.097 kb on - strand at 578.159 kb on - strand at 578.176 kb on + strand at 578.241 kb on - strand at 578.270 kb on + strand at 578.276 kb on - strand at 578.280 kb on + strand at 578.283 kb on - strand at 578.283 kb on - strand at 578.283 kb on - strand at 578.289 kb on - strand at 578.297 kb on - strand at 578.299 kb on - strand at 578.302 kb on + strand at 578.302 kb on + strand at 578.314 kb on + strand at 578.334 kb on + strand at 578.336 kb on + strand at 578.337 kb on - strand at 578.337 kb on - strand at 578.351 kb on - strand at 578.356 kb on - strand at 578.356 kb on - strand at 578.364 kb on - strand at 578.366 kb on - strand at 578.377 kb on + strand at 578.378 kb on - strand at 578.378 kb on - strand at 578.383 kb on - strand at 578.383 kb on - strand at 578.383 kb on - strand at 578.394 kb on - strand at 578.395 kb on - strand at 578.395 kb on - strand at 578.408 kb on - strand at 578.410 kb on - strand at 578.410 kb on - strand at 578.429 kb on - strand at 578.581 kb on + strand, within ybcV
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 576,443 + +0.7 576,446 + +0.1 576,464 + -0.6 576,464 + -0.9 576,470 - +1.7 576,472 + +0.5 576,472 + +0.7 576,472 + -0.7 576,475 - -0.2 576,480 - -1.3 576,515 + +0.2 576,525 - -0.2 576,525 - -0.8 576,531 - -0.3 576,538 - -0.8 576,538 - -1.4 576,539 - +0.2 576,539 - -0.3 576,541 + +1.6 576,541 + +0.5 576,551 - -0.1 576,551 - +1.1 576,561 + -0.4 576,561 - -0.3 576,563 - -1.2 576,563 - +0.1 576,611 + -0.1 576,626 - -0.1 576,640 - +1.3 576,640 - -0.3 576,645 - essD b0554 0.11 +0.1 576,662 - essD b0554 0.19 -0.5 576,662 - essD b0554 0.19 +0.0 576,670 - essD b0554 0.23 -1.2 576,670 - essD b0554 0.23 +0.4 576,672 - essD b0554 0.24 +0.2 576,672 - essD b0554 0.24 +0.1 576,672 - essD b0554 0.24 +0.1 576,678 + essD b0554 0.26 +0.5 576,680 - essD b0554 0.27 -2.0 576,684 - essD b0554 0.29 +0.4 576,688 + essD b0554 0.31 +0.7 576,691 + essD b0554 0.32 +0.6 576,704 + essD b0554 0.38 +0.3 576,704 + essD b0554 0.38 -0.4 576,712 - essD b0554 0.42 +0.2 576,719 + essD b0554 0.45 +0.2 576,725 - essD b0554 0.48 +0.5 576,725 - essD b0554 0.48 +0.0 576,732 + essD b0554 0.51 -0.1 576,732 + essD b0554 0.51 +0.2 576,739 - essD b0554 0.55 -0.4 576,740 - essD b0554 0.55 -0.2 576,740 - essD b0554 0.55 +0.5 576,744 - essD b0554 0.57 -0.6 576,751 + essD b0554 0.60 +1.1 576,773 - essD b0554 0.70 +0.8 576,819 + +0.4 576,819 + -0.4 576,826 - -0.5 576,839 + -0.2 576,855 + +0.6 576,869 + -0.2 576,869 + +0.9 576,891 + ybcS b0555 0.11 -1.0 576,891 + ybcS b0555 0.11 +0.8 576,902 + ybcS b0555 0.13 +1.2 576,920 + ybcS b0555 0.17 +0.8 576,932 + ybcS b0555 0.19 +0.6 576,932 + ybcS b0555 0.19 -0.5 576,940 - ybcS b0555 0.21 +0.1 576,940 - ybcS b0555 0.21 -3.8 576,941 - ybcS b0555 0.21 -1.6 576,941 - ybcS b0555 0.21 +0.4 576,942 + ybcS b0555 0.21 +0.0 576,956 + ybcS b0555 0.24 +0.8 576,956 - ybcS b0555 0.24 +1.1 576,975 + ybcS b0555 0.28 +0.1 576,986 + ybcS b0555 0.30 +0.2 576,986 + ybcS b0555 0.30 +0.1 576,989 - ybcS b0555 0.31 +1.1 576,990 + ybcS b0555 0.31 -1.5 576,990 + ybcS b0555 0.31 -0.4 576,990 + ybcS b0555 0.31 +0.1 576,990 + ybcS b0555 0.31 +0.6 576,990 + ybcS b0555 0.31 -0.1 576,994 - ybcS b0555 0.32 +1.2 576,994 - ybcS b0555 0.32 -0.4 576,994 - ybcS b0555 0.32 -0.3 577,024 - ybcS b0555 0.38 +0.7 577,057 + ybcS b0555 0.44 +1.4 577,072 + ybcS b0555 0.47 +0.2 577,077 - ybcS b0555 0.48 -0.5 577,117 + ybcS b0555 0.56 +0.1 577,145 - ybcS b0555 0.62 -0.3 577,146 + ybcS b0555 0.62 +0.6 577,146 + ybcS b0555 0.62 +0.4 577,156 - ybcS b0555 0.64 -0.1 577,205 + ybcS b0555 0.74 +0.3 577,227 + ybcS b0555 0.79 -0.4 577,232 + ybcS b0555 0.80 -0.2 577,243 - ybcS b0555 0.82 -0.4 577,243 - ybcS b0555 0.82 +1.1 577,285 - -2.1 577,337 + -0.0 577,337 + -0.1 577,384 - rzpD b0556 0.12 -0.2 577,384 - rzpD b0556 0.12 -0.1 577,386 + rzpD b0556 0.12 +0.5 577,394 - rzpD b0556 0.14 +3.3 577,394 - rzpD b0556 0.14 -0.9 577,405 - rzpD b0556 0.16 -0.2 577,408 - rzpD b0556 0.17 +0.8 577,662 + -0.2 577,721 + -0.4 577,728 + +0.1 577,767 + -0.0 577,767 + +0.4 577,786 + +0.2 577,786 + +0.3 577,787 + +0.5 577,791 + -0.1 577,794 - +0.6 577,797 + +0.3 577,798 + +0.1 577,799 - -0.3 577,804 - +0.1 577,814 + +0.3 577,830 + -0.5 577,835 + -0.6 577,835 + +0.5 577,835 + -2.5 577,835 + -0.9 577,872 + borD b0557 0.17 -1.8 577,911 + borD b0557 0.30 +1.1 578,011 - borD b0557 0.64 -0.0 578,018 - borD b0557 0.66 +0.4 578,018 - borD b0557 0.66 -1.2 578,021 + borD b0557 0.67 +0.4 578,025 + borD b0557 0.69 +1.1 578,028 - borD b0557 0.70 +0.3 578,031 - borD b0557 0.71 +1.3 578,049 + borD b0557 0.77 +0.9 578,049 + borD b0557 0.77 +0.5 578,050 - borD b0557 0.77 -0.7 578,050 - borD b0557 0.77 -2.1 578,062 - borD b0557 0.81 +0.3 578,062 - borD b0557 0.81 +0.8 578,067 + borD b0557 0.83 -0.4 578,070 - borD b0557 0.84 -1.2 578,070 - borD b0557 0.84 -0.3 578,071 + borD b0557 0.84 +0.1 578,071 + borD b0557 0.84 -1.2 578,081 - borD b0557 0.88 +0.0 578,081 - borD b0557 0.88 -1.4 578,089 + +0.2 578,097 - +0.2 578,097 - -0.2 578,097 - -1.4 578,159 - -0.3 578,176 + +0.4 578,241 - +0.6 578,270 + -0.7 578,276 - +1.3 578,280 + -0.3 578,283 - -0.5 578,283 - +1.1 578,283 - +1.5 578,289 - +1.6 578,297 - +2.6 578,299 - +2.6 578,302 + +0.7 578,302 + -0.5 578,314 + +0.6 578,334 + -1.1 578,336 + +2.0 578,337 - -0.8 578,337 - -0.8 578,351 - -2.7 578,356 - +0.6 578,356 - +1.6 578,364 - +0.3 578,366 - -2.2 578,377 + +1.1 578,378 - -0.4 578,378 - -0.5 578,383 - +0.1 578,383 - +0.8 578,383 - -0.4 578,394 - +0.1 578,395 - +2.6 578,395 - -0.7 578,408 - +0.1 578,410 - +2.6 578,410 - +1.6 578,429 - +2.6 578,581 + ybcV b0558 0.42 +1.6
Or see this region's nucleotide sequence