Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybcK and ybcL are separated by 464 nucleotides ybcL and ybcM are separated by 9 nucleotides ybcM and ylcH are separated by 116 nucleotides
b0544: ybcK - DLP12 prophage; predicted recombinase (NCBI), at 568,125 to 569,651
ybcK
b0545: ybcL - DLP12 prophage; predicted kinase inhibitor (NCBI), at 570,116 to 570,667
ybcL
b0546: ybcM - DLP12 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 570,677 to 571,474
ybcM
b4588: ylcH - hypothetical protein, DLP12 prophage (RefSeq), at 571,591 to 571,692
ylcH
Position (kb) 570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.954 kb on - strand at 569.991 kb on - strand at 569.991 kb on - strand at 570.177 kb on - strand, within ybcL at 570.182 kb on - strand, within ybcL at 570.217 kb on + strand, within ybcL at 570.217 kb on - strand, within ybcL at 570.225 kb on - strand, within ybcL at 570.235 kb on - strand, within ybcL at 570.236 kb on - strand, within ybcL at 570.259 kb on + strand, within ybcL at 570.265 kb on - strand, within ybcL at 570.267 kb on - strand, within ybcL at 570.273 kb on - strand, within ybcL at 570.276 kb on + strand, within ybcL at 570.283 kb on - strand, within ybcL at 570.289 kb on - strand, within ybcL at 570.289 kb on - strand at 570.293 kb on + strand, within ybcL at 570.295 kb on + strand, within ybcL at 570.296 kb on + strand, within ybcL at 570.302 kb on - strand, within ybcL at 570.302 kb on - strand, within ybcL at 570.305 kb on + strand, within ybcL at 570.305 kb on + strand, within ybcL at 570.312 kb on + strand, within ybcL at 570.323 kb on + strand, within ybcL at 570.323 kb on + strand, within ybcL at 570.323 kb on + strand, within ybcL at 570.332 kb on - strand, within ybcL at 570.342 kb on + strand, within ybcL at 570.343 kb on + strand, within ybcL at 570.343 kb on + strand, within ybcL at 570.344 kb on + strand, within ybcL at 570.350 kb on - strand, within ybcL at 570.351 kb on - strand, within ybcL at 570.354 kb on - strand, within ybcL at 570.356 kb on + strand, within ybcL at 570.364 kb on + strand, within ybcL at 570.364 kb on + strand, within ybcL at 570.372 kb on - strand, within ybcL at 570.374 kb on + strand, within ybcL at 570.374 kb on + strand, within ybcL at 570.382 kb on - strand, within ybcL at 570.401 kb on + strand, within ybcL at 570.401 kb on + strand, within ybcL at 570.409 kb on + strand, within ybcL at 570.418 kb on + strand, within ybcL at 570.440 kb on + strand, within ybcL at 570.445 kb on + strand, within ybcL at 570.450 kb on + strand, within ybcL at 570.455 kb on + strand, within ybcL at 570.455 kb on + strand, within ybcL at 570.455 kb on + strand, within ybcL at 570.458 kb on - strand, within ybcL at 570.480 kb on + strand, within ybcL at 570.482 kb on + strand, within ybcL at 570.488 kb on - strand, within ybcL at 570.496 kb on + strand, within ybcL at 570.496 kb on + strand, within ybcL at 570.501 kb on + strand, within ybcL at 570.501 kb on + strand, within ybcL at 570.505 kb on + strand, within ybcL at 570.514 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.566 kb on + strand, within ybcL at 570.576 kb on + strand, within ybcL at 570.581 kb on + strand, within ybcL at 570.625 kb on + strand at 570.644 kb on + strand at 570.650 kb on + strand at 570.650 kb on + strand at 570.661 kb on + strand at 570.665 kb on - strand at 570.668 kb on + strand at 570.668 kb on + strand at 570.672 kb on + strand at 570.675 kb on - strand at 570.675 kb on - strand at 570.675 kb on - strand at 570.682 kb on + strand at 570.682 kb on + strand at 570.688 kb on + strand at 570.688 kb on + strand at 570.697 kb on - strand at 570.772 kb on + strand, within ybcM at 570.772 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.817 kb on + strand, within ybcM at 570.896 kb on + strand, within ybcM at 570.992 kb on + strand, within ybcM at 570.992 kb on + strand, within ybcM at 571.055 kb on + strand, within ybcM at 571.084 kb on - strand, within ybcM at 571.094 kb on - strand, within ybcM at 571.105 kb on + strand, within ybcM at 571.115 kb on + strand, within ybcM at 571.124 kb on - strand, within ybcM at 571.130 kb on - strand, within ybcM at 571.170 kb on - strand, within ybcM at 571.186 kb on + strand, within ybcM at 571.207 kb on + strand, within ybcM at 571.207 kb on + strand, within ybcM at 571.215 kb on - strand, within ybcM at 571.226 kb on + strand, within ybcM at 571.283 kb on + strand, within ybcM at 571.301 kb on + strand, within ybcM at 571.301 kb on + strand, within ybcM at 571.306 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.341 kb on - strand, within ybcM at 571.345 kb on - strand, within ybcM at 571.358 kb on - strand, within ybcM at 571.418 kb on + strand at 571.427 kb on + strand at 571.477 kb on - strand at 571.486 kb on - strand at 571.546 kb on - strand at 571.560 kb on - strand at 571.575 kb on - strand at 571.575 kb on - strand at 571.585 kb on - strand at 571.596 kb on + strand at 571.596 kb on - strand at 571.596 kb on - strand at 571.602 kb on - strand, within ylcH at 571.618 kb on + strand, within ylcH at 571.623 kb on - strand, within ylcH at 571.629 kb on + strand, within ylcH at 571.638 kb on - strand, within ylcH
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 569,954 - +1.1 569,991 - -1.1 569,991 - -0.2 570,177 - ybcL b0545 0.11 -0.8 570,182 - ybcL b0545 0.12 +1.7 570,217 + ybcL b0545 0.18 +2.6 570,217 - ybcL b0545 0.18 +2.1 570,225 - ybcL b0545 0.20 +0.6 570,235 - ybcL b0545 0.22 -0.4 570,236 - ybcL b0545 0.22 -1.3 570,259 + ybcL b0545 0.26 +1.6 570,265 - ybcL b0545 0.27 +1.6 570,267 - ybcL b0545 0.27 -0.2 570,273 - ybcL b0545 0.28 +1.6 570,276 + ybcL b0545 0.29 +2.6 570,283 - ybcL b0545 0.30 +0.1 570,289 - ybcL b0545 0.31 -1.1 570,289 - -0.9 570,293 + ybcL b0545 0.32 +0.1 570,295 + ybcL b0545 0.32 -2.9 570,296 + ybcL b0545 0.33 +0.2 570,302 - ybcL b0545 0.34 -0.8 570,302 - ybcL b0545 0.34 -0.3 570,305 + ybcL b0545 0.34 +2.6 570,305 + ybcL b0545 0.34 -1.4 570,312 + ybcL b0545 0.36 -2.4 570,323 + ybcL b0545 0.38 +0.3 570,323 + ybcL b0545 0.38 +2.6 570,323 + ybcL b0545 0.38 +2.6 570,332 - ybcL b0545 0.39 +1.6 570,342 + ybcL b0545 0.41 +1.1 570,343 + ybcL b0545 0.41 -1.2 570,343 + ybcL b0545 0.41 +1.3 570,344 + ybcL b0545 0.41 -0.5 570,350 - ybcL b0545 0.42 +0.6 570,351 - ybcL b0545 0.43 +2.6 570,354 - ybcL b0545 0.43 +2.6 570,356 + ybcL b0545 0.43 +0.4 570,364 + ybcL b0545 0.45 +1.0 570,364 + ybcL b0545 0.45 +0.2 570,372 - ybcL b0545 0.46 +2.6 570,374 + ybcL b0545 0.47 +0.7 570,374 + ybcL b0545 0.47 +0.6 570,382 - ybcL b0545 0.48 +2.6 570,401 + ybcL b0545 0.52 +1.6 570,401 + ybcL b0545 0.52 +1.8 570,409 + ybcL b0545 0.53 +1.1 570,418 + ybcL b0545 0.55 +1.0 570,440 + ybcL b0545 0.59 -0.4 570,445 + ybcL b0545 0.60 +1.5 570,450 + ybcL b0545 0.61 +0.9 570,455 + ybcL b0545 0.61 +1.7 570,455 + ybcL b0545 0.61 +1.1 570,455 + ybcL b0545 0.61 +0.4 570,458 - ybcL b0545 0.62 +2.6 570,480 + ybcL b0545 0.66 +1.2 570,482 + ybcL b0545 0.66 +1.0 570,488 - ybcL b0545 0.67 +2.6 570,496 + ybcL b0545 0.69 +0.3 570,496 + ybcL b0545 0.69 +1.5 570,501 + ybcL b0545 0.70 +0.2 570,501 + ybcL b0545 0.70 +2.1 570,505 + ybcL b0545 0.70 +0.7 570,514 + ybcL b0545 0.72 +0.2 570,535 + ybcL b0545 0.76 -0.0 570,535 + ybcL b0545 0.76 +2.0 570,535 + ybcL b0545 0.76 -0.5 570,535 + ybcL b0545 0.76 +1.1 570,535 + ybcL b0545 0.76 +2.3 570,535 + ybcL b0545 0.76 +1.0 570,566 + ybcL b0545 0.82 +0.7 570,576 + ybcL b0545 0.83 +1.5 570,581 + ybcL b0545 0.84 +0.8 570,625 + +1.0 570,644 + -0.1 570,650 + +0.7 570,650 + +0.4 570,661 + +0.6 570,665 - +2.6 570,668 + -0.5 570,668 + +1.3 570,672 + +0.0 570,675 - +2.6 570,675 - +1.6 570,675 - +1.1 570,682 + -1.3 570,682 + +0.5 570,688 + +1.6 570,688 + +0.1 570,697 - +2.6 570,772 + ybcM b0546 0.12 -0.6 570,772 + ybcM b0546 0.12 -0.9 570,804 + ybcM b0546 0.16 +0.7 570,804 + ybcM b0546 0.16 +0.1 570,804 + ybcM b0546 0.16 -1.1 570,804 + ybcM b0546 0.16 -1.2 570,804 + ybcM b0546 0.16 +0.9 570,817 + ybcM b0546 0.18 +0.1 570,896 + ybcM b0546 0.27 +0.6 570,992 + ybcM b0546 0.39 +0.1 570,992 + ybcM b0546 0.39 -0.2 571,055 + ybcM b0546 0.47 +0.5 571,084 - ybcM b0546 0.51 +1.1 571,094 - ybcM b0546 0.52 +0.3 571,105 + ybcM b0546 0.54 +1.6 571,115 + ybcM b0546 0.55 +2.2 571,124 - ybcM b0546 0.56 +2.6 571,130 - ybcM b0546 0.57 +2.6 571,170 - ybcM b0546 0.62 -0.2 571,186 + ybcM b0546 0.64 -0.2 571,207 + ybcM b0546 0.66 +0.9 571,207 + ybcM b0546 0.66 -0.2 571,215 - ybcM b0546 0.67 +2.6 571,226 + ybcM b0546 0.69 +0.4 571,283 + ybcM b0546 0.76 +0.6 571,301 + ybcM b0546 0.78 -0.3 571,301 + ybcM b0546 0.78 -0.7 571,306 + ybcM b0546 0.79 -0.5 571,340 + ybcM b0546 0.83 +0.3 571,340 + ybcM b0546 0.83 +1.6 571,340 + ybcM b0546 0.83 -1.3 571,340 + ybcM b0546 0.83 +0.2 571,341 - ybcM b0546 0.83 +2.6 571,345 - ybcM b0546 0.84 +1.1 571,358 - ybcM b0546 0.85 +2.6 571,418 + +0.9 571,427 + +0.5 571,477 - +1.1 571,486 - -0.5 571,546 - +0.1 571,560 - -0.6 571,575 - -0.6 571,575 - +0.4 571,585 - -0.0 571,596 + +0.9 571,596 - +0.4 571,596 - +0.2 571,602 - ylcH b4588 0.11 +0.0 571,618 + ylcH b4588 0.26 +0.1 571,623 - ylcH b4588 0.31 -1.1 571,629 + ylcH b4588 0.37 -1.5 571,638 - ylcH b4588 0.46 +0.1
Or see this region's nucleotide sequence