Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mhpR and mhpA are separated by 190 nucleotides mhpA and mhpB are separated by 1 nucleotides mhpB and mhpC are separated by 2 nucleotides
b0346: mhpR - DNA-binding transcriptional activator, 3HPP-binding (RefSeq), at 366,811 to 367,644
mhpR
b0347: mhpA - 3-(3-hydroxyphenyl)propionate hydroxylase (NCBI), at 367,835 to 369,499
mhpA
b0348: mhpB - 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (NCBI), at 369,501 to 370,445
mhpB
b0349: mhpC - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase (VIMSS), at 370,448 to 371,329
mhpC
Position (kb) 367
368
369
370 Strain fitness (log2 ratio) -1
0
1 at 366.960 kb on + strand, within mhpR at 366.960 kb on + strand, within mhpR at 366.960 kb on + strand, within mhpR at 366.996 kb on + strand, within mhpR at 367.173 kb on - strand, within mhpR at 367.287 kb on + strand, within mhpR at 367.325 kb on + strand, within mhpR at 367.326 kb on - strand, within mhpR at 367.592 kb on - strand at 367.592 kb on - strand at 367.596 kb on + strand at 367.728 kb on + strand at 367.728 kb on + strand at 367.736 kb on - strand at 367.736 kb on - strand at 367.736 kb on - strand at 367.738 kb on - strand at 367.784 kb on + strand at 367.784 kb on + strand at 367.784 kb on + strand at 367.792 kb on - strand at 367.792 kb on - strand at 367.792 kb on - strand at 367.865 kb on + strand at 367.865 kb on + strand at 367.926 kb on - strand at 367.940 kb on - strand at 367.942 kb on + strand at 367.942 kb on + strand at 367.942 kb on + strand at 368.079 kb on - strand, within mhpA at 368.142 kb on - strand, within mhpA at 368.261 kb on - strand, within mhpA at 368.479 kb on + strand, within mhpA at 368.486 kb on - strand, within mhpA at 368.568 kb on - strand, within mhpA at 368.661 kb on - strand, within mhpA at 368.728 kb on + strand, within mhpA at 368.728 kb on + strand, within mhpA at 368.755 kb on + strand, within mhpA at 368.761 kb on - strand, within mhpA at 368.763 kb on + strand, within mhpA at 368.763 kb on + strand, within mhpA at 368.778 kb on + strand, within mhpA at 368.883 kb on - strand, within mhpA at 368.898 kb on - strand, within mhpA at 368.898 kb on - strand, within mhpA at 369.036 kb on - strand, within mhpA at 369.077 kb on - strand, within mhpA at 369.133 kb on + strand, within mhpA at 369.232 kb on + strand, within mhpA at 369.283 kb on + strand, within mhpA at 369.418 kb on + strand at 369.625 kb on + strand, within mhpB at 369.705 kb on - strand, within mhpB at 369.705 kb on - strand, within mhpB at 369.829 kb on + strand, within mhpB at 369.829 kb on + strand, within mhpB at 369.837 kb on - strand, within mhpB at 369.908 kb on + strand, within mhpB at 369.908 kb on + strand, within mhpB at 370.056 kb on - strand, within mhpB at 370.198 kb on - strand, within mhpB at 370.263 kb on + strand, within mhpB at 370.344 kb on + strand, within mhpB at 370.364 kb on + strand at 370.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 366,960 + mhpR b0346 0.18 +0.2 366,960 + mhpR b0346 0.18 -1.2 366,960 + mhpR b0346 0.18 -1.1 366,996 + mhpR b0346 0.22 +0.5 367,173 - mhpR b0346 0.43 +0.9 367,287 + mhpR b0346 0.57 -1.0 367,325 + mhpR b0346 0.62 -0.7 367,326 - mhpR b0346 0.62 +0.0 367,592 - +0.1 367,592 - -0.3 367,596 + -0.8 367,728 + -0.1 367,728 + -0.5 367,736 - -0.0 367,736 - +0.7 367,736 - +0.2 367,738 - -1.0 367,784 + +0.5 367,784 + -0.3 367,784 + +0.5 367,792 - -0.2 367,792 - -0.7 367,792 - -0.1 367,865 + +0.2 367,865 + -0.2 367,926 - -0.7 367,940 - +0.2 367,942 + +0.1 367,942 + +0.3 367,942 + +0.6 368,079 - mhpA b0347 0.15 -0.9 368,142 - mhpA b0347 0.18 -0.1 368,261 - mhpA b0347 0.26 -0.5 368,479 + mhpA b0347 0.39 +0.5 368,486 - mhpA b0347 0.39 +0.4 368,568 - mhpA b0347 0.44 +0.2 368,661 - mhpA b0347 0.50 -0.4 368,728 + mhpA b0347 0.54 -0.9 368,728 + mhpA b0347 0.54 -0.9 368,755 + mhpA b0347 0.55 -0.1 368,761 - mhpA b0347 0.56 +0.3 368,763 + mhpA b0347 0.56 -0.7 368,763 + mhpA b0347 0.56 -0.9 368,778 + mhpA b0347 0.57 -0.4 368,883 - mhpA b0347 0.63 -1.2 368,898 - mhpA b0347 0.64 -0.8 368,898 - mhpA b0347 0.64 -0.2 369,036 - mhpA b0347 0.72 -1.7 369,077 - mhpA b0347 0.75 -1.4 369,133 + mhpA b0347 0.78 +0.2 369,232 + mhpA b0347 0.84 +0.2 369,283 + mhpA b0347 0.87 +0.1 369,418 + -0.9 369,625 + mhpB b0348 0.13 -0.3 369,705 - mhpB b0348 0.22 +0.1 369,705 - mhpB b0348 0.22 -0.6 369,829 + mhpB b0348 0.35 +0.2 369,829 + mhpB b0348 0.35 +1.1 369,837 - mhpB b0348 0.36 -0.2 369,908 + mhpB b0348 0.43 -0.7 369,908 + mhpB b0348 0.43 -1.4 370,056 - mhpB b0348 0.59 -1.1 370,198 - mhpB b0348 0.74 -0.6 370,263 + mhpB b0348 0.81 -0.4 370,344 + mhpB b0348 0.89 -0.2 370,364 + -1.3 370,398 - -0.1
Or see this region's nucleotide sequence