Strain Fitness in Escherichia coli BW25113 around b2839

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,976,216	-	lysA	b2838	0.44	-4.4
2,976,302	+	lysA	b2838	0.51	-3.8
2,976,305	+	lysA	b2838	0.51	-3.4
2,976,305	+	lysA	b2838	0.51	-4.1
2,976,305	-	lysA	b2838	0.51	-5.3
2,976,305	-	lysA	b2838	0.51	-5.2
2,976,313	-	lysA	b2838	0.52	-5.0
2,976,319	-	lysA	b2838	0.52	-5.4
2,976,345	-	lysA	b2838	0.54	-2.8
2,976,397	-	lysA	b2838	0.58	-6.6
2,976,401	+	lysA	b2838	0.59	-4.1
2,976,420	+	lysA	b2838	0.60	-6.0
2,976,424	-	lysA	b2838	0.61	-4.0
2,976,424	-	lysA	b2838	0.61	-5.4
2,976,428	-	lysA	b2838	0.61	-4.1
2,976,428	-	lysA	b2838	0.61	-4.1
2,976,479	-	lysA	b2838	0.65	-4.2
2,976,494	+	lysA	b2838	0.66	-6.2
2,976,501	+	lysA	b2838	0.67	-4.0
2,976,501	+	lysA	b2838	0.67	-4.4
2,976,532	-	lysA	b2838	0.69	-4.3
2,976,532	-	lysA	b2838	0.69	-3.6
2,976,554	-	lysA	b2838	0.71	-6.1
2,976,681	+	lysA	b2838	0.81	-3.3
2,976,681	+	lysA	b2838	0.81	-3.3
2,976,827	+				-4.8
2,976,827	+				-4.0
2,976,835	-				-1.7
2,976,835	-				-5.7
2,976,899	+				-4.6
2,976,907	-				-4.0
2,976,926	-				-3.2
2,977,048	-				+0.2
2,977,235	-	lysR	b2839	0.21	-5.2
2,977,253	+	lysR	b2839	0.22	-6.4
2,977,339	-	lysR	b2839	0.32	-4.9
2,977,339	-	lysR	b2839	0.32	-2.8
2,977,671	-	lysR	b2839	0.67	-4.8
2,977,719	+	lysR	b2839	0.72	-4.9
2,977,792	-	lysR	b2839	0.80	-4.6
2,977,830	+	lysR	b2839	0.84	-4.9
2,977,830	-	lysR	b2839	0.84	-5.4
2,977,838	+	lysR	b2839	0.85	-4.6
2,977,838	+	lysR	b2839	0.85	-3.9
2,977,888	+				-5.5
2,977,891	-				-4.6
2,977,891	-				-5.1
2,977,964	+				-0.1
2,978,047	-	ygeA	b2840	0.12	-0.0
2,978,150	-	ygeA	b2840	0.27	+0.3
2,978,283	-	ygeA	b2840	0.46	-0.1
2,978,375	+	ygeA	b2840	0.59	-0.9
2,978,407	+	ygeA	b2840	0.64	+0.5
2,978,407	+	ygeA	b2840	0.64	+0.3
2,978,412	-	ygeA	b2840	0.65	-0.5
2,978,412	-	ygeA	b2840	0.65	-0.2
2,978,442	+	ygeA	b2840	0.69	+0.2
2,978,442	+	ygeA	b2840	0.69	-0.3
2,978,530	+	ygeA	b2840	0.82	-1.1
2,978,535	+	ygeA	b2840	0.82	+0.1
2,978,538	-	ygeA	b2840	0.83	+0.1
2,978,554	+	ygeA	b2840	0.85	+0.0
2,978,562	-	ygeA	b2840	0.86	+0.5
2,978,672	-				-0.7
2,978,705	+				+0.1
2,978,778	-				+0.8
2,978,847	-				-0.0
2,978,893	+				-0.5
2,978,900	+				-0.2
2,978,910	+				+0.6
2,978,918	-				+0.2
2,978,953	+	araE	b2841	0.12	-0.1
2,978,953	+	araE	b2841	0.12	+0.7