Strain Fitness in Escherichia coli BW25113 around b3565

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
3,726,474	-	xylB	b3564	0.37	-0.3
3,726,479	-	xylB	b3564	0.37	-0.0
3,726,506	-	xylB	b3564	0.39	+1.5
3,726,591	+	xylB	b3564	0.45	-1.5
3,726,653	+	xylB	b3564	0.49	-0.6
3,726,653	+	xylB	b3564	0.49	-1.1
3,726,701	-	xylB	b3564	0.52	+1.3
3,726,730	-	xylB	b3564	0.54	+0.1
3,726,803	+	xylB	b3564	0.59	-1.2
3,726,822	+	xylB	b3564	0.61	-1.2
3,726,833	-	xylB	b3564	0.61	+0.1
3,726,833	-	xylB	b3564	0.61	+0.3
3,726,882	-	xylB	b3564	0.65	+0.2
3,726,913	+	xylB	b3564	0.67	-0.8
3,726,974	-	xylB	b3564	0.71	-0.7
3,726,974	-	xylB	b3564	0.71	-0.2
3,727,031	+	xylB	b3564	0.75	-0.3
3,727,091	-	xylB	b3564	0.79	+0.4
3,727,091	-	xylB	b3564	0.79	-0.0
3,727,093	-	xylB	b3564	0.79	-0.3
3,727,093	-	xylB	b3564	0.79	-0.3
3,727,093	-	xylB	b3564	0.79	-0.1
3,727,136	+	xylB	b3564	0.82	-0.4
3,727,136	+	xylB	b3564	0.82	-0.9
3,727,149	-	xylB	b3564	0.83	+0.6
3,727,151	+	xylB	b3564	0.83	+0.1
3,727,151	+	xylB	b3564	0.83	-1.7
3,727,174	+	xylB	b3564	0.85	+0.0
3,727,174	+	xylB	b3564	0.85	-0.6
3,727,186	+	xylB	b3564	0.86	-1.2
3,727,187	+	xylB	b3564	0.86	-0.7
3,727,187	+	xylB	b3564	0.86	-0.5
3,727,195	-	xylB	b3564	0.86	+0.2
3,727,195	-	xylB	b3564	0.86	+0.5
3,727,227	-	xylB	b3564	0.88	+0.6
3,727,231	-	xylB	b3564	0.89	+0.1
3,727,254	-				+0.2
3,727,276	-				+1.0
3,727,276	-				+0.3
3,727,278	+				-0.3
3,727,278	+				-0.4
3,727,278	+				-1.3
3,727,278	+				-0.8
3,727,278	+				-0.8
3,727,297	-				+0.4
3,727,327	+				-0.1
3,727,333	-				+0.2
3,727,335	+				-0.6
3,727,357	-				-1.2
3,727,357	-				-0.5
3,727,371	+				-1.3
3,727,371	+				-0.8
3,727,376	+				-1.1
3,727,378	-				+0.5
3,727,378	-				+0.3
3,727,379	+				-0.6
3,727,384	-				-1.2
3,727,384	-				-0.1
3,727,384	-				+0.0
3,727,507	-				-0.5
3,727,517	+				-1.3
3,727,523	+				-0.5
3,727,529	-				-0.5
3,727,624	-	xylA	b3565	0.12	-0.3
3,727,634	-	xylA	b3565	0.13	+1.2
3,727,643	+	xylA	b3565	0.13	-0.5
3,727,749	+	xylA	b3565	0.21	-0.5
3,727,792	+	xylA	b3565	0.25	-0.3
3,727,826	-	xylA	b3565	0.27	+0.3
3,727,826	-	xylA	b3565	0.27	+0.3
3,727,846	-	xylA	b3565	0.29	+0.1
3,727,848	-	xylA	b3565	0.29	-0.3
3,727,848	-	xylA	b3565	0.29	+0.0
3,727,850	+	xylA	b3565	0.29	-0.2
3,727,850	+	xylA	b3565	0.29	-1.0
3,727,850	+	xylA	b3565	0.29	-1.4
3,727,858	-	xylA	b3565	0.30	+0.2
3,727,858	-	xylA	b3565	0.30	+0.2
3,727,859	-	xylA	b3565	0.30	-0.0
3,727,898	+	xylA	b3565	0.33	-1.5
3,727,918	+	xylA	b3565	0.34	-0.5
3,727,967	-	xylA	b3565	0.38	-0.6
3,728,021	+	xylA	b3565	0.42	-1.0
3,728,033	+	xylA	b3565	0.43	-0.3
3,728,041	-	xylA	b3565	0.43	-0.4
3,728,041	-	xylA	b3565	0.43	-0.4
3,728,060	+	xylA	b3565	0.45	-0.5
3,728,070	-	xylA	b3565	0.46	-0.2
3,728,140	-	xylA	b3565	0.51	+0.0
3,728,140	-	xylA	b3565	0.51	-0.0
3,728,200	-	xylA	b3565	0.55	-0.1
3,728,200	-	xylA	b3565	0.55	+0.5
3,728,332	-	xylA	b3565	0.65	+0.1
3,728,332	-	xylA	b3565	0.65	-0.7
3,728,364	+	xylA	b3565	0.68	-2.5
3,728,364	+	xylA	b3565	0.68	-0.3
3,728,365	-	xylA	b3565	0.68	+0.3
3,728,390	+	xylA	b3565	0.70	-0.8
3,728,390	+	xylA	b3565	0.70	+0.4
3,728,416	-	xylA	b3565	0.72	+0.2
3,728,471	-	xylA	b3565	0.76	-0.4
3,728,558	+	xylA	b3565	0.83	-0.8
3,728,564	-	xylA	b3565	0.83	+0.2
3,728,568	+	xylA	b3565	0.83	-0.8
3,728,576	-	xylA	b3565	0.84	+0.3
3,728,577	-	xylA	b3565	0.84	-0.0
3,728,589	+	xylA	b3565	0.85	-1.2
3,728,607	-	xylA	b3565	0.86	+0.6
3,728,607	-	xylA	b3565	0.86	-0.4
3,728,607	-	xylA	b3565	0.86	-0.5
3,728,607	-	xylA	b3565	0.86	+0.1
3,728,612	-	xylA	b3565	0.87	-0.6
3,728,613	-	xylA	b3565	0.87	+0.1
3,728,617	-	xylA	b3565	0.87	-0.7
3,728,617	-	xylA	b3565	0.87	+0.1
3,728,649	-	xylA	b3565	0.89	-0.6
3,728,666	+				+0.2
3,728,666	+				-0.4
3,728,669	-				+0.1
3,728,671	+				-0.3
3,728,674	-				+0.2
3,728,685	+				-1.3
3,728,685	+				+0.3
3,728,687	-				+1.1
3,728,689	+				-1.1
3,728,689	+				+0.4
3,728,705	+				-0.3
3,728,705	+				-1.8
3,728,728	+				-1.2
3,728,729	+				-0.4
3,728,736	-				-1.8
3,728,736	-				+0.4
3,728,747	+				-0.8
3,728,747	+				-1.7
3,728,747	+				-0.7
3,728,747	+				-1.5
3,728,755	-				-0.1
3,728,755	-				-0.3
3,728,755	-				-0.2
3,728,755	-				-1.5
3,728,760	+				-1.0
3,728,770	+				-0.5
3,728,770	+				-0.1
3,728,770	+				-0.5
3,728,775	+				-0.8
3,728,805	+				-0.1
3,728,805	+				-0.4
3,728,805	+				-0.7
3,728,805	+				-0.6
3,728,813	-				+1.1
3,728,819	-				-1.3
3,728,824	+				+0.4
3,728,824	+				-1.2
3,728,837	+				-2.1
3,728,837	+				-1.0
3,728,839	+				-0.6
3,728,849	+				-0.8
3,728,849	+				-0.9
3,728,850	+				-1.0
3,728,883	+				-0.9
3,729,101	-				+2.9
3,729,102	+				+1.9
3,729,110	-				+1.9
3,729,121	-				+2.9
3,729,124	-				+1.3
3,729,140	-				+0.5
3,729,140	-				+2.9
3,729,152	-				+1.9
3,729,152	-				+0.4
3,729,152	-				+0.4
3,729,175	-				-0.1
3,729,188	-				+1.3
3,729,188	-				+2.9
3,729,191	-				+0.5
3,729,201	+				+1.3
3,729,203	-				+1.4
3,729,206	+				+2.9
3,729,214	+				+1.3
3,729,214	-				+0.0
3,729,236	+				+0.5
3,729,258	+	xylF	b3566	0.10	+0.1
3,729,258	+	xylF	b3566	0.10	-0.8
3,729,260	+	xylF	b3566	0.11	+0.5
3,729,260	+	xylF	b3566	0.11	-0.1
3,729,346	+	xylF	b3566	0.19	+2.9
3,729,351	+	xylF	b3566	0.20	+0.9
3,729,441	-	xylF	b3566	0.29	+0.7
3,729,446	+	xylF	b3566	0.29	+2.9
3,729,448	+	xylF	b3566	0.30	+2.9
3,729,490	-	xylF	b3566	0.34	+0.9
3,729,492	-	xylF	b3566	0.34	-0.3
3,729,492	-	xylF	b3566	0.34	-0.2
3,729,492	-	xylF	b3566	0.34	+1.3
3,729,504	-	xylF	b3566	0.35	+2.4
3,729,573	+	xylF	b3566	0.42	+0.0
3,729,581	-	xylF	b3566	0.43	+0.2
3,729,583	-	xylF	b3566	0.43	+0.5
3,729,600	-	xylF	b3566	0.45	+0.4
3,729,612	-	xylF	b3566	0.46	+0.4
3,729,612	-	xylF	b3566	0.46	+0.7
3,729,619	+	xylF	b3566	0.47	-1.1
3,729,619	+	xylF	b3566	0.47	-1.2
3,729,622	+	xylF	b3566	0.47	-0.5
3,729,622	+	xylF	b3566	0.47	-0.4
3,729,622	+	xylF	b3566	0.47	+0.1
3,729,627	-	xylF	b3566	0.48	-0.4
3,729,627	-	xylF	b3566	0.48	+0.3
3,729,627	-	xylF	b3566	0.48	-0.2
3,729,635	-	xylF	b3566	0.48	-0.8
3,729,642	+	xylF	b3566	0.49	+0.7
3,729,645	-	xylF	b3566	0.49	+1.4
3,729,645	-	xylF	b3566	0.49	-1.3
3,729,647	+	xylF	b3566	0.50	-0.1
3,729,650	-	xylF	b3566	0.50	-0.7
3,729,650	-	xylF	b3566	0.50	+0.3
3,729,650	-	xylF	b3566	0.50	-0.8
3,729,650	-	xylF	b3566	0.50	+0.0
3,729,666	+	xylF	b3566	0.52	+0.9
3,729,674	-	xylF	b3566	0.52	-1.3
3,729,674	-	xylF	b3566	0.52	+0.7
3,729,714	-	xylF	b3566	0.56	-1.0
3,729,714	-	xylF	b3566	0.56	-0.3
3,729,718	+	xylF	b3566	0.57	+0.3
3,729,718	+	xylF	b3566	0.57	+0.7
3,729,718	+	xylF	b3566	0.57	-0.6
3,729,718	+	xylF	b3566	0.57	+0.8
3,729,719	-	xylF	b3566	0.57	-0.3
3,729,719	-	xylF	b3566	0.57	-0.1
3,729,725	-	xylF	b3566	0.58	+0.7
3,729,726	-	xylF	b3566	0.58	+0.4
3,729,726	-	xylF	b3566	0.58	-1.8
3,729,726	-	xylF	b3566	0.58	-0.2
3,729,726	-	xylF	b3566	0.58	-0.6
3,729,736	-	xylF	b3566	0.59	-0.1
3,729,736	-	xylF	b3566	0.59	-0.6