Strain Fitness in Escherichia coli BW25113 around b3460

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
3,595,637	+				+0.2
3,595,669	+				+0.7
3,595,968	+				-0.2
3,595,975	+				+0.4
3,596,005	+				+6.5
3,596,005	-				+0.2
3,596,005	-				-1.4
3,596,007	+				+0.1
3,596,011	-				-0.1
3,596,012	-				-0.3
3,596,013	-				-0.3
3,596,043	+				-0.1
3,596,048	+	yhhK	b3459	0.11	+1.1
3,596,048	+	yhhK	b3459	0.11	+0.9
3,596,056	-	yhhK	b3459	0.13	-1.1
3,596,056	-	yhhK	b3459	0.13	+0.2
3,596,061	-	yhhK	b3459	0.14	+0.3
3,596,117	+	yhhK	b3459	0.29	+0.6
3,596,128	-	yhhK	b3459	0.32	+0.5
3,596,163	-	yhhK	b3459	0.41	-2.3
3,596,163	-	yhhK	b3459	0.41	-1.1
3,596,169	+	yhhK	b3459	0.42	-0.0
3,596,209	+	yhhK	b3459	0.53	-0.7
3,596,209	+	yhhK	b3459	0.53	+0.2
3,596,251	-	yhhK	b3459	0.64	+0.4
3,596,251	-	yhhK	b3459	0.64	+0.2
3,596,267	+	yhhK	b3459	0.68	-0.1
3,596,267	+	yhhK	b3459	0.68	-1.0
3,596,288	+	yhhK	b3459	0.73	-0.2
3,596,334	+	yhhK	b3459	0.85	-0.0
3,596,420	+				-0.8
3,596,427	+				+0.3
3,596,427	+				+0.7
3,596,500	+				+0.5
3,596,588	-				-0.1
3,596,657	+				+0.3
3,596,737	+	livJ	b3460	0.14	+0.7
3,596,906	+	livJ	b3460	0.30	+0.3
3,596,914	-	livJ	b3460	0.30	+1.3
3,596,914	-	livJ	b3460	0.30	+0.6
3,596,994	-	livJ	b3460	0.38	+1.0
3,596,994	-	livJ	b3460	0.38	+1.6
3,597,006	+	livJ	b3460	0.39	+0.2
3,597,133	+	livJ	b3460	0.50	+0.4
3,597,141	-	livJ	b3460	0.51	+0.2
3,597,141	-	livJ	b3460	0.51	+0.6
3,597,141	-	livJ	b3460	0.51	+1.0
3,597,141	-	livJ	b3460	0.51	+0.8
3,597,148	+	livJ	b3460	0.52	+0.3
3,597,154	+	livJ	b3460	0.52	+0.9
3,597,154	+	livJ	b3460	0.52	+1.2
3,597,156	-	livJ	b3460	0.52	+0.3
3,597,161	+	livJ	b3460	0.53	+0.3
3,597,188	+	livJ	b3460	0.55	+0.7
3,597,188	+	livJ	b3460	0.55	+1.6
3,597,240	+	livJ	b3460	0.60	+0.6
3,597,240	+	livJ	b3460	0.60	-0.3
3,597,240	-	livJ	b3460	0.60	+0.8
3,597,250	+	livJ	b3460	0.61	+0.3
3,597,250	+	livJ	b3460	0.61	-0.5
3,597,251	-	livJ	b3460	0.61	+0.6
3,597,251	-	livJ	b3460	0.61	-0.1
3,597,251	-	livJ	b3460	0.61	-0.0
3,597,276	+	livJ	b3460	0.63	+0.3
3,597,312	+	livJ	b3460	0.66	+0.2
3,597,312	+	livJ	b3460	0.66	+0.1
3,597,320	-	livJ	b3460	0.67	+0.5
3,597,377	+	livJ	b3460	0.72	-0.7
3,597,377	+	livJ	b3460	0.72	-0.4
3,597,385	-	livJ	b3460	0.73	+0.9
3,597,385	-	livJ	b3460	0.73	-0.7
3,597,385	-	livJ	b3460	0.73	+0.6
3,597,385	-	livJ	b3460	0.73	+0.8
3,597,417	-	livJ	b3460	0.76	+0.7
3,597,519	-	livJ	b3460	0.85	+0.2
3,597,519	-	livJ	b3460	0.85	+0.2
3,597,556	+	livJ	b3460	0.89	+0.6
3,597,923	+				+0.6
3,597,931	-				-0.4
3,597,931	-				-0.1