Strain Fitness in Escherichia coli BW25113 around b4391

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
4,625,892	+	nadR	b4390	0.45	+0.9
4,625,900	-	nadR	b4390	0.46	+0.3
4,625,920	+	nadR	b4390	0.47	-0.2
4,625,920	+	nadR	b4390	0.47	-1.8
4,625,930	+	nadR	b4390	0.48	-0.4
4,625,951	+	nadR	b4390	0.50	-0.4
4,625,960	-	nadR	b4390	0.50	-0.4
4,626,064	+	nadR	b4390	0.59	+0.8
4,626,064	+	nadR	b4390	0.59	-0.5
4,626,105	-	nadR	b4390	0.62	-0.3
4,626,105	-	nadR	b4390	0.62	-0.1
4,626,143	+	nadR	b4390	0.65	-0.6
4,626,179	+	nadR	b4390	0.68	+0.1
4,626,308	-	nadR	b4390	0.79	-0.8
4,626,400	+	nadR	b4390	0.86	-0.1
4,626,400	+	nadR	b4390	0.86	+0.1
4,626,400	+	nadR	b4390	0.86	-0.2
4,626,428	+	nadR	b4390	0.88	-2.6
4,626,535	+				+0.8
4,626,535	+				-0.8
4,626,540	+				+0.2
4,626,592	-				+0.2
4,626,636	+				+0.7
4,626,655	+				-4.9
4,626,796	+				+0.4
4,626,873	+				+0.6
4,626,876	-				-0.1
4,626,876	-				+0.2
4,626,896	+				+0.1
4,626,952	+				+0.9
4,626,959	-				+0.7
4,626,959	-				+0.4
4,627,007	-				+1.1
4,627,039	+				+0.9
4,627,068	-	yjjK	b4391	0.11	+1.0
4,627,068	-	yjjK	b4391	0.11	+1.0
4,627,070	+	yjjK	b4391	0.12	+0.9
4,627,070	+	yjjK	b4391	0.12	+0.8
4,627,113	+	yjjK	b4391	0.14	-0.1
4,627,130	+	yjjK	b4391	0.15	+0.4
4,627,213	+	yjjK	b4391	0.20	+0.1
4,627,213	+	yjjK	b4391	0.20	+0.9
4,627,213	+	yjjK	b4391	0.20	+2.1
4,627,224	+	yjjK	b4391	0.21	+0.8
4,627,374	+	yjjK	b4391	0.30	+0.8
4,627,374	+	yjjK	b4391	0.30	+0.3
4,627,413	-	yjjK	b4391	0.32	+1.3
4,627,472	+	yjjK	b4391	0.36	+0.8
4,627,660	-	yjjK	b4391	0.47	+1.3
4,627,660	-	yjjK	b4391	0.47	-0.1
4,627,665	-	yjjK	b4391	0.47	+0.5
4,627,665	-	yjjK	b4391	0.47	+0.2
4,627,668	-	yjjK	b4391	0.47	+0.6
4,627,812	+	yjjK	b4391	0.56	+0.5
4,627,831	+	yjjK	b4391	0.57	+0.7
4,627,844	+	yjjK	b4391	0.58	+0.6
4,627,882	-	yjjK	b4391	0.60	-2.5
4,627,882	-	yjjK	b4391	0.60	+0.9
4,627,918	+	yjjK	b4391	0.62	+1.1
4,628,027	-	yjjK	b4391	0.69	+0.7
4,628,050	-	yjjK	b4391	0.70	+0.8
4,628,076	+	yjjK	b4391	0.72	+1.3
4,628,111	+	yjjK	b4391	0.74	+0.8
4,628,166	-	yjjK	b4391	0.77	+0.3
4,628,166	-	yjjK	b4391	0.77	+1.5
4,628,176	-	yjjK	b4391	0.78	+1.5
4,628,176	-	yjjK	b4391	0.78	+0.6
4,628,219	-	yjjK	b4391	0.80	+0.8
4,628,234	-	yjjK	b4391	0.81	+0.7
4,628,394	+				+0.3
4,628,394	+				+0.6
4,628,396	+				+0.6
4,628,565	-				-0.3
4,628,621	-				-0.5
4,628,650	+				-0.5
4,628,650	+				+0.3
4,628,726	-				+0.4
4,628,740	-				-0.7
4,628,807	-				+0.2
4,628,890	-				-0.0
4,628,922	+				-2.8
4,628,930	-				+0.3
4,628,963	-	slt	b4392	0.11	-0.3
4,629,174	+	slt	b4392	0.22	+0.6
4,629,187	+	slt	b4392	0.22	+0.9
4,629,189	+	slt	b4392	0.22	-0.1
4,629,189	+	slt	b4392	0.22	-0.6
4,629,197	+	slt	b4392	0.23	-0.5
4,629,198	+	slt	b4392	0.23	-0.4
4,629,225	-	slt	b4392	0.24	-0.4
4,629,247	+	slt	b4392	0.25	-0.1
4,629,337	+	slt	b4392	0.30	-0.2
4,629,347	+	slt	b4392	0.30	-0.2
4,629,349	+	slt	b4392	0.31	+0.2
4,629,357	-	slt	b4392	0.31	+0.1
4,629,403	+	slt	b4392	0.33	-0.0
4,629,411	+	slt	b4392	0.34	+0.4
4,629,416	+	slt	b4392	0.34	-0.6
4,629,427	+	slt	b4392	0.35	+0.3
4,629,435	-	slt	b4392	0.35	-0.2
4,629,435	-	slt	b4392	0.35	+0.2
4,629,435	-	slt	b4392	0.35	+0.3
4,629,510	-	slt	b4392	0.39	+0.0
4,629,510	-	slt	b4392	0.39	+0.4
4,629,538	+	slt	b4392	0.40	-0.1
4,629,538	+	slt	b4392	0.40	+0.1