Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjbH and yjbT are separated by 46 nucleotides yjbT and yjbA are separated by 269 nucleotides yjbA and xylE are separated by 43 nucleotides
b4029: yjbH - predicted porin (NCBI), at 4,235,657 to 4,237,753
yjbH
b4620: yjbT - hypothetical protein, no homologs (RefSeq), at 4,237,800 to 4,238,078
yjbT
b4030: yjbA - phosphate-starvation-inducible protein PsiE (NCBI), at 4,238,348 to 4,238,758
yjbA
b4031: xylE - D-xylose transporter (NCBI), at 4,238,802 to 4,240,277
xylE
Position (kb) 4238
4239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4237.406 kb on + strand, within yjbH at 4237.440 kb on - strand, within yjbH at 4237.472 kb on - strand, within yjbH at 4237.488 kb on + strand, within yjbH at 4237.526 kb on - strand, within yjbH at 4237.533 kb on + strand, within yjbH at 4237.578 kb on - strand at 4237.578 kb on - strand at 4237.580 kb on - strand at 4237.667 kb on + strand at 4237.667 kb on + strand at 4237.781 kb on + strand at 4237.907 kb on - strand, within yjbT at 4237.911 kb on + strand, within yjbT at 4237.911 kb on + strand, within yjbT at 4237.931 kb on + strand, within yjbT at 4237.931 kb on + strand, within yjbT at 4237.950 kb on + strand, within yjbT at 4237.963 kb on - strand, within yjbT at 4238.017 kb on + strand, within yjbT at 4238.017 kb on + strand, within yjbT at 4238.320 kb on - strand at 4238.331 kb on + strand at 4238.331 kb on + strand at 4238.335 kb on + strand at 4238.360 kb on + strand at 4238.419 kb on + strand, within yjbA at 4238.419 kb on + strand, within yjbA at 4238.526 kb on - strand, within yjbA at 4238.600 kb on + strand, within yjbA at 4238.631 kb on + strand, within yjbA at 4238.631 kb on + strand, within yjbA at 4238.686 kb on + strand, within yjbA at 4238.686 kb on + strand, within yjbA at 4238.718 kb on + strand at 4238.786 kb on + strand at 4238.786 kb on + strand at 4238.794 kb on - strand at 4238.807 kb on + strand at 4239.030 kb on + strand, within xylE at 4239.105 kb on + strand, within xylE at 4239.115 kb on + strand, within xylE at 4239.115 kb on + strand, within xylE at 4239.139 kb on + strand, within xylE at 4239.139 kb on + strand, within xylE at 4239.147 kb on - strand, within xylE at 4239.157 kb on - strand, within xylE at 4239.159 kb on - strand, within xylE at 4239.211 kb on - strand, within xylE at 4239.211 kb on - strand, within xylE at 4239.281 kb on - strand, within xylE at 4239.297 kb on + strand, within xylE at 4239.297 kb on + strand, within xylE at 4239.333 kb on - strand, within xylE at 4239.346 kb on + strand, within xylE at 4239.346 kb on + strand, within xylE at 4239.371 kb on + strand, within xylE at 4239.379 kb on + strand, within xylE at 4239.382 kb on + strand, within xylE at 4239.384 kb on + strand, within xylE at 4239.384 kb on + strand, within xylE at 4239.384 kb on + strand, within xylE at 4239.384 kb on + strand, within xylE at 4239.389 kb on + strand, within xylE at 4239.392 kb on - strand, within xylE at 4239.392 kb on - strand, within xylE at 4239.446 kb on - strand, within xylE at 4239.446 kb on - strand, within xylE at 4239.504 kb on - strand, within xylE at 4239.504 kb on - strand, within xylE at 4239.506 kb on + strand, within xylE at 4239.506 kb on + strand, within xylE at 4239.512 kb on - strand, within xylE at 4239.513 kb on + strand, within xylE at 4239.513 kb on + strand, within xylE at 4239.513 kb on + strand, within xylE at 4239.560 kb on + strand, within xylE at 4239.560 kb on + strand, within xylE at 4239.565 kb on + strand, within xylE at 4239.569 kb on - strand, within xylE at 4239.575 kb on + strand, within xylE at 4239.581 kb on - strand, within xylE at 4239.583 kb on - strand, within xylE at 4239.583 kb on - strand, within xylE at 4239.593 kb on + strand, within xylE at 4239.593 kb on + strand, within xylE at 4239.593 kb on + strand, within xylE at 4239.593 kb on + strand, within xylE at 4239.597 kb on + strand, within xylE at 4239.610 kb on + strand, within xylE at 4239.610 kb on + strand, within xylE at 4239.619 kb on - strand, within xylE at 4239.620 kb on + strand, within xylE at 4239.620 kb on + strand, within xylE at 4239.620 kb on + strand, within xylE at 4239.621 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.622 kb on + strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.630 kb on - strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.632 kb on + strand, within xylE at 4239.640 kb on - strand, within xylE at 4239.642 kb on + strand, within xylE at 4239.644 kb on + strand, within xylE at 4239.647 kb on + strand, within xylE at 4239.647 kb on + strand, within xylE at 4239.647 kb on + strand, within xylE at 4239.647 kb on + strand, within xylE at 4239.652 kb on + strand, within xylE at 4239.652 kb on + strand, within xylE at 4239.652 kb on - strand, within xylE at 4239.652 kb on - strand, within xylE at 4239.655 kb on - strand, within xylE at 4239.655 kb on - strand, within xylE at 4239.655 kb on - strand, within xylE at 4239.655 kb on - strand, within xylE at 4239.678 kb on + strand, within xylE at 4239.678 kb on + strand, within xylE at 4239.686 kb on + strand, within xylE at 4239.686 kb on + strand, within xylE at 4239.686 kb on + strand, within xylE at 4239.686 kb on + strand, within xylE at 4239.688 kb on + strand, within xylE at 4239.713 kb on - strand, within xylE
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 4,237,406 + yjbH b4029 0.83 +0.5 4,237,440 - yjbH b4029 0.85 +1.9 4,237,472 - yjbH b4029 0.87 -0.1 4,237,488 + yjbH b4029 0.87 +0.3 4,237,526 - yjbH b4029 0.89 +0.1 4,237,533 + yjbH b4029 0.89 +0.7 4,237,578 - -1.0 4,237,578 - -1.4 4,237,580 - -0.4 4,237,667 + -0.7 4,237,667 + -0.1 4,237,781 + +0.4 4,237,907 - yjbT b4620 0.38 +0.2 4,237,911 + yjbT b4620 0.40 +0.8 4,237,911 + yjbT b4620 0.40 +0.0 4,237,931 + yjbT b4620 0.47 -0.7 4,237,931 + yjbT b4620 0.47 +1.3 4,237,950 + yjbT b4620 0.54 +0.1 4,237,963 - yjbT b4620 0.58 -0.4 4,238,017 + yjbT b4620 0.78 -0.9 4,238,017 + yjbT b4620 0.78 -0.4 4,238,320 - +1.2 4,238,331 + -0.4 4,238,331 + +0.1 4,238,335 + +0.5 4,238,360 + +0.4 4,238,419 + yjbA b4030 0.17 +0.7 4,238,419 + yjbA b4030 0.17 +1.2 4,238,526 - yjbA b4030 0.43 +0.1 4,238,600 + yjbA b4030 0.61 +1.1 4,238,631 + yjbA b4030 0.69 +1.0 4,238,631 + yjbA b4030 0.69 +1.4 4,238,686 + yjbA b4030 0.82 +0.7 4,238,686 + yjbA b4030 0.82 +1.2 4,238,718 + +1.5 4,238,786 + -2.2 4,238,786 + +0.0 4,238,794 - +0.3 4,238,807 + +0.1 4,239,030 + xylE b4031 0.15 -0.0 4,239,105 + xylE b4031 0.21 +0.1 4,239,115 + xylE b4031 0.21 -0.6 4,239,115 + xylE b4031 0.21 +0.0 4,239,139 + xylE b4031 0.23 +0.6 4,239,139 + xylE b4031 0.23 +0.4 4,239,147 - xylE b4031 0.23 -0.7 4,239,157 - xylE b4031 0.24 +0.3 4,239,159 - xylE b4031 0.24 -0.4 4,239,211 - xylE b4031 0.28 +0.4 4,239,211 - xylE b4031 0.28 -0.0 4,239,281 - xylE b4031 0.32 +0.4 4,239,297 + xylE b4031 0.34 +0.2 4,239,297 + xylE b4031 0.34 -0.2 4,239,333 - xylE b4031 0.36 +0.5 4,239,346 + xylE b4031 0.37 +0.5 4,239,346 + xylE b4031 0.37 +0.3 4,239,371 + xylE b4031 0.39 +0.9 4,239,379 + xylE b4031 0.39 +0.2 4,239,382 + xylE b4031 0.39 +0.3 4,239,384 + xylE b4031 0.39 -0.7 4,239,384 + xylE b4031 0.39 -0.2 4,239,384 + xylE b4031 0.39 -0.1 4,239,384 + xylE b4031 0.39 -0.4 4,239,389 + xylE b4031 0.40 -1.1 4,239,392 - xylE b4031 0.40 -1.2 4,239,392 - xylE b4031 0.40 +0.2 4,239,446 - xylE b4031 0.44 +0.9 4,239,446 - xylE b4031 0.44 +1.0 4,239,504 - xylE b4031 0.48 +0.1 4,239,504 - xylE b4031 0.48 -0.4 4,239,506 + xylE b4031 0.48 -0.4 4,239,506 + xylE b4031 0.48 +0.1 4,239,512 - xylE b4031 0.48 +0.4 4,239,513 + xylE b4031 0.48 +0.7 4,239,513 + xylE b4031 0.48 -0.1 4,239,513 + xylE b4031 0.48 +1.9 4,239,560 + xylE b4031 0.51 -0.3 4,239,560 + xylE b4031 0.51 -0.2 4,239,565 + xylE b4031 0.52 +0.2 4,239,569 - xylE b4031 0.52 +0.1 4,239,575 + xylE b4031 0.52 -0.0 4,239,581 - xylE b4031 0.53 +0.6 4,239,583 - xylE b4031 0.53 +2.3 4,239,583 - xylE b4031 0.53 +0.0 4,239,593 + xylE b4031 0.54 -0.2 4,239,593 + xylE b4031 0.54 -1.0 4,239,593 + xylE b4031 0.54 -0.1 4,239,593 + xylE b4031 0.54 +0.6 4,239,597 + xylE b4031 0.54 +0.3 4,239,610 + xylE b4031 0.55 -0.8 4,239,610 + xylE b4031 0.55 +0.5 4,239,619 - xylE b4031 0.55 +1.6 4,239,620 + xylE b4031 0.55 -0.7 4,239,620 + xylE b4031 0.55 +0.1 4,239,620 + xylE b4031 0.55 -0.1 4,239,621 + xylE b4031 0.55 +0.7 4,239,622 + xylE b4031 0.56 +0.4 4,239,622 + xylE b4031 0.56 +0.2 4,239,622 + xylE b4031 0.56 -1.1 4,239,622 + xylE b4031 0.56 +0.4 4,239,622 + xylE b4031 0.56 -0.7 4,239,622 + xylE b4031 0.56 -0.5 4,239,622 + xylE b4031 0.56 -0.1 4,239,622 + xylE b4031 0.56 +0.1 4,239,622 + xylE b4031 0.56 -1.3 4,239,622 + xylE b4031 0.56 -1.7 4,239,622 + xylE b4031 0.56 +0.1 4,239,622 + xylE b4031 0.56 -0.8 4,239,622 + xylE b4031 0.56 +0.1 4,239,622 + xylE b4031 0.56 -0.5 4,239,622 + xylE b4031 0.56 +0.6 4,239,622 + xylE b4031 0.56 -0.9 4,239,622 + xylE b4031 0.56 +0.1 4,239,622 + xylE b4031 0.56 +0.0 4,239,622 + xylE b4031 0.56 -0.1 4,239,622 + xylE b4031 0.56 +0.2 4,239,622 + xylE b4031 0.56 -1.4 4,239,622 + xylE b4031 0.56 -0.0 4,239,622 + xylE b4031 0.56 -1.3 4,239,622 + xylE b4031 0.56 +0.6 4,239,622 + xylE b4031 0.56 -0.1 4,239,622 + xylE b4031 0.56 +0.1 4,239,622 + xylE b4031 0.56 -0.2 4,239,622 + xylE b4031 0.56 -0.4 4,239,622 + xylE b4031 0.56 -0.1 4,239,622 + xylE b4031 0.56 +0.0 4,239,622 + xylE b4031 0.56 -0.0 4,239,622 + xylE b4031 0.56 -0.0 4,239,622 + xylE b4031 0.56 -0.5 4,239,622 + xylE b4031 0.56 +0.1 4,239,622 + xylE b4031 0.56 -0.3 4,239,622 + xylE b4031 0.56 -0.2 4,239,622 + xylE b4031 0.56 -0.5 4,239,622 + xylE b4031 0.56 -0.0 4,239,622 + xylE b4031 0.56 -0.2 4,239,622 + xylE b4031 0.56 +0.1 4,239,622 + xylE b4031 0.56 -0.1 4,239,622 + xylE b4031 0.56 -0.4 4,239,622 + xylE b4031 0.56 -1.3 4,239,622 + xylE b4031 0.56 -0.1 4,239,622 + xylE b4031 0.56 -0.0 4,239,622 + xylE b4031 0.56 +1.4 4,239,622 + xylE b4031 0.56 -1.2 4,239,622 + xylE b4031 0.56 -0.7 4,239,622 + xylE b4031 0.56 -0.2 4,239,622 + xylE b4031 0.56 +0.4 4,239,630 - xylE b4031 0.56 +0.6 4,239,630 - xylE b4031 0.56 +0.4 4,239,630 - xylE b4031 0.56 +0.3 4,239,630 - xylE b4031 0.56 +0.6 4,239,630 - xylE b4031 0.56 -2.5 4,239,630 - xylE b4031 0.56 +1.6 4,239,630 - xylE b4031 0.56 +0.2 4,239,630 - xylE b4031 0.56 -1.5 4,239,630 - xylE b4031 0.56 -1.9 4,239,630 - xylE b4031 0.56 +0.3 4,239,630 - xylE b4031 0.56 -0.8 4,239,630 - xylE b4031 0.56 +1.3 4,239,632 + xylE b4031 0.56 -0.2 4,239,632 + xylE b4031 0.56 -1.4 4,239,632 + xylE b4031 0.56 +0.3 4,239,632 + xylE b4031 0.56 +0.2 4,239,632 + xylE b4031 0.56 -0.2 4,239,632 + xylE b4031 0.56 +0.9 4,239,632 + xylE b4031 0.56 -0.5 4,239,632 + xylE b4031 0.56 -0.1 4,239,632 + xylE b4031 0.56 +0.8 4,239,632 + xylE b4031 0.56 -0.6 4,239,640 - xylE b4031 0.57 -0.1 4,239,642 + xylE b4031 0.57 +0.2 4,239,644 + xylE b4031 0.57 -0.2 4,239,647 + xylE b4031 0.57 -0.9 4,239,647 + xylE b4031 0.57 -0.0 4,239,647 + xylE b4031 0.57 -0.8 4,239,647 + xylE b4031 0.57 -0.4 4,239,652 + xylE b4031 0.58 +0.2 4,239,652 + xylE b4031 0.58 -0.3 4,239,652 - xylE b4031 0.58 +0.1 4,239,652 - xylE b4031 0.58 -1.2 4,239,655 - xylE b4031 0.58 -0.9 4,239,655 - xylE b4031 0.58 +0.1 4,239,655 - xylE b4031 0.58 +1.1 4,239,655 - xylE b4031 0.58 -0.4 4,239,678 + xylE b4031 0.59 -0.1 4,239,678 + xylE b4031 0.59 -0.4 4,239,686 + xylE b4031 0.60 -0.1 4,239,686 + xylE b4031 0.60 -0.5 4,239,686 + xylE b4031 0.60 -0.1 4,239,686 + xylE b4031 0.60 -0.4 4,239,688 + xylE b4031 0.60 +0.1 4,239,713 - xylE b4031 0.62 -0.4
Or see this region's nucleotide sequence