Strain Fitness in Escherichia coli BW25113 around b3867

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
4,049,100	+	csrC	b4457	0.17	-0.2
4,049,125	-	csrC	b4457	0.27	+0.1
4,049,181	+	csrC	b4457	0.50	+0.5
4,049,212	+	csrC	b4457	0.62	-0.2
4,049,246	+	csrC	b4457	0.76	-0.6
4,049,261	-	csrC	b4457	0.82	-0.2
4,049,261	-	csrC	b4457	0.82	+0.6
4,049,352	+				+0.4
4,049,352	+				-0.4
4,049,391	-				+0.2
4,049,398	+				-0.4
4,049,537	-	yihI	b3866	0.33	+0.6
4,049,537	-	yihI	b3866	0.33	+0.7
4,049,546	-	yihI	b3866	0.35	+0.1
4,049,599	-	yihI	b3866	0.45	+0.4
4,049,599	-	yihI	b3866	0.45	-0.1
4,049,607	-	yihI	b3866	0.46	+0.3
4,049,607	-	yihI	b3866	0.46	+0.1
4,049,632	-	yihI	b3866	0.51	+0.2
4,049,661	+	yihI	b3866	0.57	-0.7
4,049,687	+	yihI	b3866	0.62	+0.2
4,049,688	-	yihI	b3866	0.62	+0.4
4,049,718	-	yihI	b3866	0.68	+0.0
4,049,755	-	yihI	b3866	0.75	+0.1
4,049,755	-	yihI	b3866	0.75	-0.1
4,049,758	+	yihI	b3866	0.76	+0.2
4,049,804	+	yihI	b3866	0.85	-0.2
4,049,872	-				-1.4
4,049,897	-				-0.1
4,049,899	+				+0.2
4,049,939	+				-0.1
4,049,953	-				-0.4
4,049,982	+				-0.3
4,050,064	+				+0.6
4,050,064	+				+0.3
4,050,138	+				+0.4
4,050,138	+				+1.0
4,050,172	-				+0.5
4,050,204	-				+0.2
4,050,204	-				+0.9
4,050,304	+	hemN	b3867	0.17	+0.8
4,050,304	+	hemN	b3867	0.17	+1.7
4,050,327	-	hemN	b3867	0.19	+0.3
4,050,327	-	hemN	b3867	0.19	+1.0
4,050,327	-	hemN	b3867	0.19	+0.2
4,050,354	+	hemN	b3867	0.21	+0.6
4,050,386	+	hemN	b3867	0.23	+0.6
4,050,549	-	hemN	b3867	0.35	+0.2
4,050,562	-	hemN	b3867	0.36	+0.2
4,050,562	-	hemN	b3867	0.36	+0.5
4,050,568	+	hemN	b3867	0.36	+0.6
4,050,576	-	hemN	b3867	0.37	+1.0
4,050,578	+	hemN	b3867	0.37	+0.5
4,050,578	+	hemN	b3867	0.37	+0.9
4,050,589	+	hemN	b3867	0.38	+1.2
4,050,589	+	hemN	b3867	0.38	+0.9
4,050,618	-	hemN	b3867	0.40	+0.6
4,050,639	+	hemN	b3867	0.42	+0.2
4,050,647	-	hemN	b3867	0.42	+1.2
4,050,647	-	hemN	b3867	0.42	+0.8
4,050,649	+	hemN	b3867	0.42	+0.5
4,050,649	+	hemN	b3867	0.42	-0.6
4,050,655	-	hemN	b3867	0.43	-0.0
4,050,657	-	hemN	b3867	0.43	-1.2
4,050,657	-	hemN	b3867	0.43	+0.4
4,050,674	-	hemN	b3867	0.44	+0.8
4,050,683	+	hemN	b3867	0.45	+0.0
4,050,683	+	hemN	b3867	0.45	+0.5
4,050,742	+	hemN	b3867	0.49	+0.8
4,050,782	+	hemN	b3867	0.52	-0.6
4,050,783	-	hemN	b3867	0.52	+1.4
4,050,783	-	hemN	b3867	0.52	+0.4
4,050,783	-	hemN	b3867	0.52	+0.1
4,050,988	-	hemN	b3867	0.67	+1.0
4,050,998	-	hemN	b3867	0.68	+0.2
4,051,005	+	hemN	b3867	0.68	+0.1
4,051,005	+	hemN	b3867	0.68	+0.1
4,051,008	-	hemN	b3867	0.68	-0.9
4,051,018	-	hemN	b3867	0.69	+0.7
4,051,030	+	hemN	b3867	0.70	+0.6
4,051,043	-	hemN	b3867	0.71	+0.6
4,051,043	-	hemN	b3867	0.71	+0.2
4,051,069	+	hemN	b3867	0.73	+0.7
4,051,081	+	hemN	b3867	0.74	+0.1
4,051,089	-	hemN	b3867	0.74	-0.1
4,051,089	-	hemN	b3867	0.74	+0.6
4,051,091	-	hemN	b3867	0.74	+0.2
4,051,107	+	hemN	b3867	0.76	+0.6
4,051,133	+	hemN	b3867	0.78	+2.0
4,051,154	-	hemN	b3867	0.79	+0.8
4,051,154	-	hemN	b3867	0.79	+0.2
4,051,185	+	hemN	b3867	0.81	+0.5
4,051,185	+	hemN	b3867	0.81	-0.3
4,051,216	+	hemN	b3867	0.84	+0.7
4,051,224	-	hemN	b3867	0.84	+0.7
4,051,229	+	hemN	b3867	0.84	+1.5
4,051,229	+	hemN	b3867	0.84	+1.5
4,051,275	+	hemN	b3867	0.88	+0.6
4,051,418	+				+2.5
4,051,418	+				+0.6
4,051,499	+				+0.1
4,051,613	-				-0.2
4,051,613	-				-0.4
4,051,628	-				-0.1
4,051,679	-				-1.1
4,051,679	-				+0.2
4,051,692	+	yshB	b4686	0.20	-0.8
4,051,726	+	yshB	b4686	0.50	-0.1
4,051,726	+	yshB	b4686	0.50	+0.2
4,051,730	+	yshB	b4686	0.54	+0.5
4,051,741	-	yshB	b4686	0.64	+0.4
4,051,808	+				+0.0
4,051,894	+				+0.2
4,051,894	+				-0.7
4,051,909	+				+0.2
4,051,909	+				-2.0
4,051,909	-				-0.3
4,051,929	+				+0.7
4,051,941	+				+0.1
4,052,012	+				+0.1
4,052,015	-				-0.6
4,052,126	+	glnG	b3868	0.17	+0.1
4,052,126	+	glnG	b3868	0.17	+0.0
4,052,197	-	glnG	b3868	0.22	+0.1
4,052,255	+	glnG	b3868	0.26	+1.0
4,052,328	-	glnG	b3868	0.31	-0.1
4,052,423	+	glnG	b3868	0.38	-1.2
4,052,423	+	glnG	b3868	0.38	-0.2