Strain Fitness in Escherichia coli BW25113 around b3842

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
4,021,418	+	tatC	b3839	0.85	-2.5
4,021,419	+	tatC	b3839	0.85	-1.8
4,021,443	+	tatC	b3839	0.88	-3.9
4,021,470	+				+0.7
4,021,489	-				-0.8
4,021,555	-				+0.5
4,021,555	-				-1.1
4,021,568	+				+0.1
4,021,568	+				+0.5
4,021,570	+				-0.1
4,021,647	+				-0.4
4,021,666	-				+0.6
4,021,666	-	tatD	b4483	0.11	+0.5
4,021,667	+	tatD	b4483	0.11	-0.2
4,021,670	-	tatD	b4483	0.12	-0.7
4,021,670	-	tatD	b4483	0.12	+0.2
4,021,680	-	tatD	b4483	0.13	-0.2
4,021,683	+	tatD	b4483	0.14	+0.7
4,021,683	+	tatD	b4483	0.14	+0.7
4,021,683	+	tatD	b4483	0.14	+0.5
4,021,683	+	tatD	b4483	0.14	+0.1
4,021,691	-	tatD	b4483	0.15	+5.9
4,021,691	-	tatD	b4483	0.15	+0.2
4,021,691	-	tatD	b4483	0.15	+0.4
4,021,718	-	tatD	b4483	0.18	+0.1
4,021,718	-	tatD	b4483	0.18	+0.7
4,021,733	-	tatD	b4483	0.20	-1.0
4,021,733	-	tatD	b4483	0.20	+0.0
4,021,768	+	tatD	b4483	0.24	-0.9
4,021,768	+	tatD	b4483	0.24	-0.0
4,021,778	-	tatD	b4483	0.26	-0.9
4,021,783	-	tatD	b4483	0.26	+0.1
4,021,825	+	tatD	b4483	0.32	+0.3
4,021,825	+	tatD	b4483	0.32	+0.4
4,021,923	-	tatD	b4483	0.44	-0.5
4,021,931	+	tatD	b4483	0.45	-0.2
4,021,931	+	tatD	b4483	0.45	+0.0
4,021,959	+	tatD	b4483	0.49	-0.6
4,021,959	+	tatD	b4483	0.49	+0.4
4,021,978	+	tatD	b4483	0.51	+0.3
4,021,978	+	tatD	b4483	0.51	+0.1
4,021,978	+	tatD	b4483	0.51	-0.2
4,021,986	-	tatD	b4483	0.52	-0.3
4,021,986	-	tatD	b4483	0.52	-0.1
4,021,986	-	tatD	b4483	0.52	+0.5
4,021,986	-	tatD	b4483	0.52	+0.3
4,021,994	-	tatD	b4483	0.53	+0.2
4,022,055	+	tatD	b4483	0.61	+0.2
4,022,055	+	tatD	b4483	0.61	-0.7
4,022,056	-	tatD	b4483	0.61	-0.6
4,022,124	+	tatD	b4483	0.70	-1.2
4,022,191	+	tatD	b4483	0.78	+0.2
4,022,223	+	tatD	b4483	0.83	-0.3
4,022,252	-	tatD	b4483	0.86	+0.1
4,022,261	+	tatD	b4483	0.87	-0.2
4,022,271	+	tatD	b4483	0.89	+0.8
4,022,271	+	tatD	b4483	0.89	-0.2
4,022,271	+	tatD	b4483	0.89	-0.0
4,022,271	+	tatD	b4483	0.89	+0.2
4,022,284	+				-0.3
4,022,284	+				+0.5
4,022,284	+				+0.3
4,022,284	-				+0.0
4,022,293	+				-1.4
4,022,294	+				+0.7
4,022,306	-				-0.4
4,022,306	-				-0.5
4,022,327	-				-0.7
4,022,339	-				+0.1
4,022,353	+				-1.3
4,022,353	+				+0.0
4,022,376	-				+0.8
4,022,376	-				+0.3
4,022,379	+				+0.9
4,022,379	+				+0.5
4,022,387	-				+0.5
4,022,389	-				-1.5
4,022,399	-				+0.3
4,022,424	+	rfaH	b3842	0.14	+1.1
4,022,424	+	rfaH	b3842	0.14	+1.3
4,022,431	-	rfaH	b3842	0.15	-1.6
4,022,434	+	rfaH	b3842	0.16	+0.3
4,022,437	-	rfaH	b3842	0.17	+0.7
4,022,495	-	rfaH	b3842	0.28	+0.1
4,022,500	-	rfaH	b3842	0.29	+0.7
4,022,500	-	rfaH	b3842	0.29	+0.8
4,022,557	+	rfaH	b3842	0.41	+0.9
4,022,559	+	rfaH	b3842	0.42	+1.4
4,022,563	+	rfaH	b3842	0.42	+1.2
4,022,585	+	rfaH	b3842	0.47	+1.7
4,022,624	-	rfaH	b3842	0.55	+0.4
4,022,634	+	rfaH	b3842	0.57	+0.3
4,022,650	-	rfaH	b3842	0.60	+0.1
4,022,688	-	rfaH	b3842	0.68	+0.8
4,022,701	+	rfaH	b3842	0.71	+1.4
4,022,701	+	rfaH	b3842	0.71	-0.3
4,022,709	+	rfaH	b3842	0.72	+1.3
4,022,759	+	rfaH	b3842	0.82	+2.5
4,022,762	-	rfaH	b3842	0.83	+0.9
4,022,764	+	rfaH	b3842	0.83	+1.6
4,022,765	+	rfaH	b3842	0.84	+1.6
4,022,777	+	rfaH	b3842	0.86	+1.6
4,022,793	-	rfaH	b3842	0.89	+0.6
4,022,813	+				+1.2
4,022,816	+				+1.8
4,022,824	+				+1.8
4,022,849	+				+0.5
4,022,857	-				+0.2
4,022,884	-				-0.1
4,022,905	-				+0.5
4,022,920	+				+0.5
4,022,980	+				+6.5
4,022,980	+				+6.8
4,022,986	+				+0.0
4,022,996	+				-0.9
4,022,996	+				+0.4
4,022,996	+				+0.5
4,022,996	+				+0.0
4,023,004	-				+0.3
4,023,004	-				-2.2
4,023,037	+				-1.5
4,023,037	+				+0.1
4,023,043	-				-0.4