Strain Fitness in Escherichia coli BW25113 around b3624

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
3,796,405	-	rfaK	b3623	0.13	-1.1
3,796,481	-	rfaK	b3623	0.20	-0.3
3,796,526	-	rfaK	b3623	0.25	+2.5
3,796,529	-	rfaK	b3623	0.25	+0.9
3,796,529	-	rfaK	b3623	0.25	+0.9
3,796,552	-	rfaK	b3623	0.27	+0.2
3,796,667	-	rfaK	b3623	0.38	+1.3
3,796,667	-	rfaK	b3623	0.38	-0.3
3,796,701	-	rfaK	b3623	0.41	+2.9
3,796,705	-	rfaK	b3623	0.41	+1.9
3,796,830	-	rfaK	b3623	0.53	+0.9
3,796,889	-	rfaK	b3623	0.58	-0.1
3,796,955	+	rfaK	b3623	0.65	+2.9
3,796,981	-	rfaK	b3623	0.67	+1.3
3,796,981	-	rfaK	b3623	0.67	+0.9
3,796,981	-	rfaK	b3623	0.67	+2.9
3,796,991	-	rfaK	b3623	0.68	+2.3
3,796,999	-	rfaK	b3623	0.69	+1.9
3,796,999	-	rfaK	b3623	0.69	+0.9
3,797,015	-	rfaK	b3623	0.70	+1.3
3,797,015	-	rfaK	b3623	0.70	+3.5
3,797,015	-	rfaK	b3623	0.70	+0.6
3,797,015	-	rfaK	b3623	0.70	+3.9
3,797,015	-	rfaK	b3623	0.70	-0.3
3,797,015	-	rfaK	b3623	0.70	-0.8
3,797,017	-	rfaK	b3623	0.70	+1.1
3,797,025	-	rfaK	b3623	0.71	-0.7
3,797,190	-	rfaK	b3623	0.86	+0.1
3,797,190	-	rfaK	b3623	0.86	+0.3
3,797,354	-				+2.9
3,797,441	-				-0.6
3,797,538	-	rfaZ	b3624	0.20	+2.3
3,797,538	-	rfaZ	b3624	0.20	+0.3
3,797,620	-	rfaZ	b3624	0.30	-0.3
3,797,716	-	rfaZ	b3624	0.41	-0.4
3,797,716	-	rfaZ	b3624	0.41	+4.7
3,797,716	-	rfaZ	b3624	0.41	+2.4
3,797,720	-	rfaZ	b3624	0.41	+1.3
3,797,726	-	rfaZ	b3624	0.42	+0.6
3,797,727	-	rfaZ	b3624	0.42	+0.9
3,797,727	-	rfaZ	b3624	0.42	-0.1
3,797,775	+	rfaZ	b3624	0.48	+0.4
3,797,775	+	rfaZ	b3624	0.48	+0.6
3,797,778	+	rfaZ	b3624	0.48	+0.8
3,797,783	-	rfaZ	b3624	0.49	+0.1
3,797,783	-	rfaZ	b3624	0.49	+2.3
3,797,786	-	rfaZ	b3624	0.49	+2.9
3,797,786	-	rfaZ	b3624	0.49	+0.9
3,797,791	-	rfaZ	b3624	0.50	-0.1
3,797,793	+	rfaZ	b3624	0.50	-0.1
3,797,793	+	rfaZ	b3624	0.50	+1.9
3,797,793	-	rfaZ	b3624	0.50	+2.4
3,797,877	-	rfaZ	b3624	0.60	+1.6
3,797,879	-	rfaZ	b3624	0.60	+2.9
3,797,932	-	rfaZ	b3624	0.66	+3.5
3,797,932	-	rfaZ	b3624	0.66	+0.9
3,797,939	-	rfaZ	b3624	0.67	-0.1
3,797,939	-	rfaZ	b3624	0.67	+1.6
3,797,956	-	rfaZ	b3624	0.69	+2.9
3,797,960	-	rfaZ	b3624	0.69	+1.2
3,798,269	-				+1.2
3,798,277	-				+1.5
3,798,363	-	rfaY	b3625	0.10	-0.6
3,798,363	-	rfaY	b3625	0.10	-1.6
3,798,363	-	rfaY	b3625	0.10	+0.4
3,798,370	-	rfaY	b3625	0.11	+1.9
3,798,408	-	rfaY	b3625	0.17	-0.4
3,798,409	-	rfaY	b3625	0.17	+0.9
3,798,409	-	rfaY	b3625	0.17	-1.4
3,798,423	+	rfaY	b3625	0.19	+2.9
3,798,431	-	rfaY	b3625	0.20	+1.6
3,798,441	-	rfaY	b3625	0.22	+0.9
3,798,455	-	rfaY	b3625	0.24	-1.7
3,798,455	-	rfaY	b3625	0.24	+0.5
3,798,509	-	rfaY	b3625	0.31	+1.9
3,798,509	-	rfaY	b3625	0.31	+0.8
3,798,512	+	rfaY	b3625	0.32	+0.9
3,798,513	+	rfaY	b3625	0.32	+2.9
3,798,520	-	rfaY	b3625	0.33	-1.7
3,798,521	-	rfaY	b3625	0.33	+0.4
3,798,521	-	rfaY	b3625	0.33	+2.0
3,798,521	-	rfaY	b3625	0.33	-0.9
3,798,527	+	rfaY	b3625	0.34	+1.9
3,798,541	-	rfaY	b3625	0.36	+0.5
3,798,585	-	rfaY	b3625	0.42	-0.4
3,798,591	+	rfaY	b3625	0.43	+2.9
3,798,599	-	rfaY	b3625	0.44	-0.6
3,798,599	-	rfaY	b3625	0.44	+0.1
3,798,599	-	rfaY	b3625	0.44	-0.0
3,798,599	-	rfaY	b3625	0.44	+1.7
3,798,601	+	rfaY	b3625	0.44	+2.9
3,798,609	-	rfaY	b3625	0.46	-0.8
3,798,609	-	rfaY	b3625	0.46	+0.3
3,798,609	-	rfaY	b3625	0.46	-1.0
3,798,609	-	rfaY	b3625	0.46	+0.6
3,798,620	-	rfaY	b3625	0.47	+1.7
3,798,621	-	rfaY	b3625	0.47	+1.1
3,798,621	-	rfaY	b3625	0.47	-0.8
3,798,633	+	rfaY	b3625	0.49	+1.0
3,798,681	-	rfaY	b3625	0.56	-0.1
3,798,681	-	rfaY	b3625	0.56	+1.3
3,798,751	-	rfaY	b3625	0.66	+0.3
3,798,763	-	rfaY	b3625	0.68	-1.0
3,798,763	-	rfaY	b3625	0.68	+1.4
3,798,794	-	rfaY	b3625	0.72	-1.0
3,798,846	-	rfaY	b3625	0.80	-1.2
3,798,865	-	rfaY	b3625	0.82	+1.2
3,798,908	-	rfaY	b3625	0.88	+0.6
3,799,039	-				+1.5
3,799,039	-				+0.0
3,799,074	+				+3.5
3,799,133	-	rfaJ	b3626	0.12	+0.3
3,799,133	-	rfaJ	b3626	0.12	+2.2
3,799,200	+	rfaJ	b3626	0.19	+2.9