Strain Fitness in Escherichia coli BW25113 around b3358

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
3,483,856	-				-0.0
3,483,944	-				-0.0
3,483,944	-				-0.4
3,483,962	+				-0.3
3,483,970	+				-0.5
3,483,982	-				+0.8
3,484,008	+				+0.3
3,484,008	+				+0.5
3,484,015	+				-0.3
3,484,030	+				+0.1
3,484,035	+				-0.3
3,484,060	-				+1.5
3,484,069	+				+0.1
3,484,083	+				-0.1
3,484,118	+				-2.6
3,484,755	+				+0.4
3,484,755	+				-0.9
3,484,769	+				-0.7
3,484,786	-				-0.4
3,484,786	-				+0.1
3,484,800	+				-1.5
3,484,801	-				-1.3
3,484,803	-				-0.5
3,484,838	-				-0.3
3,484,852	-				-0.7
3,484,860	-				+0.2
3,484,860	-				+0.2
3,484,882	+				-1.0
3,484,890	-				-1.0
3,484,890	-				+0.4
3,484,892	+				-0.9
3,484,892	+				-1.5
3,484,907	+				-2.3
3,484,907	+				+0.2
3,484,915	-				-0.2
3,484,960	-				-1.6
3,484,960	-				-0.3
3,484,960	-				-0.3
3,484,962	+				-0.2
3,484,970	-				-1.3
3,485,038	+	yhfK	b3358	0.11	-0.7
3,485,038	+	yhfK	b3358	0.11	-0.1
3,485,057	+	yhfK	b3358	0.12	+0.1
3,485,057	+	yhfK	b3358	0.12	-0.4
3,485,057	+	yhfK	b3358	0.12	-0.0
3,485,057	+	yhfK	b3358	0.12	+0.1
3,485,064	-	yhfK	b3358	0.12	-0.2
3,485,065	-	yhfK	b3358	0.12	+0.2
3,485,065	-	yhfK	b3358	0.12	-0.6
3,485,102	+	yhfK	b3358	0.14	-0.8
3,485,116	+	yhfK	b3358	0.14	-1.7
3,485,116	+	yhfK	b3358	0.14	-0.5
3,485,167	+	yhfK	b3358	0.17	-2.7
3,485,170	+	yhfK	b3358	0.17	-1.5
3,485,170	+	yhfK	b3358	0.17	+0.7
3,485,170	-	yhfK	b3358	0.17	-0.7
3,485,205	+	yhfK	b3358	0.19	-0.3
3,485,214	+	yhfK	b3358	0.19	-0.4
3,485,222	-	yhfK	b3358	0.19	-0.8
3,485,227	+	yhfK	b3358	0.20	-1.3
3,485,242	-	yhfK	b3358	0.20	-2.1
3,485,242	-	yhfK	b3358	0.20	-0.0
3,485,251	+	yhfK	b3358	0.21	-0.9
3,485,259	-	yhfK	b3358	0.21	+0.3
3,485,259	-	yhfK	b3358	0.21	-1.1
3,485,263	-	yhfK	b3358	0.21	-0.6
3,485,268	-	yhfK	b3358	0.22	-0.6
3,485,325	+	yhfK	b3358	0.24	-1.0
3,485,325	+	yhfK	b3358	0.24	+0.0
3,485,328	+	yhfK	b3358	0.24	-0.4
3,485,329	-	yhfK	b3358	0.25	-0.1
3,485,329	-	yhfK	b3358	0.25	-1.2
3,485,329	-	yhfK	b3358	0.25	-0.5
3,485,329	-	yhfK	b3358	0.25	+0.1
3,485,330	+	yhfK	b3358	0.25	-0.6
3,485,331	-	yhfK	b3358	0.25	+0.2
3,485,331	-	yhfK	b3358	0.25	-0.5
3,485,348	+	yhfK	b3358	0.25	+0.7
3,485,348	+	yhfK	b3358	0.25	+0.6
3,485,364	-	yhfK	b3358	0.26	-0.2
3,485,370	+	yhfK	b3358	0.26	-0.8
3,485,375	+	yhfK	b3358	0.27	+0.6
3,485,377	-	yhfK	b3358	0.27	-0.9
3,485,413	-	yhfK	b3358	0.29	-0.7
3,485,413	-	yhfK	b3358	0.29	-0.6
3,485,423	+	yhfK	b3358	0.29	-1.0
3,485,441	+	yhfK	b3358	0.30	+0.0
3,485,441	+	yhfK	b3358	0.30	-0.1
3,485,441	+	yhfK	b3358	0.30	-0.5
3,485,441	+	yhfK	b3358	0.30	+0.3
3,485,451	+	yhfK	b3358	0.30	-1.2
3,485,475	-	yhfK	b3358	0.31	-0.5
3,485,475	-	yhfK	b3358	0.31	+0.8
3,485,486	+	yhfK	b3358	0.32	-0.3
3,485,504	-	yhfK	b3358	0.33	+0.6
3,485,553	+	yhfK	b3358	0.35	-1.0
3,485,553	+	yhfK	b3358	0.35	-0.8
3,485,558	+	yhfK	b3358	0.35	+0.4
3,485,558	+	yhfK	b3358	0.35	-1.3
3,485,567	+	yhfK	b3358	0.36	-1.6
3,485,568	+	yhfK	b3358	0.36	-0.3
3,485,568	+	yhfK	b3358	0.36	-1.3
3,485,587	-	yhfK	b3358	0.37	-2.1
3,485,587	-	yhfK	b3358	0.37	-1.5
3,485,594	+	yhfK	b3358	0.37	-0.6
3,485,594	+	yhfK	b3358	0.37	-1.4
3,485,680	-	yhfK	b3358	0.41	-1.0
3,485,756	+	yhfK	b3358	0.45	-0.1
3,485,821	-	yhfK	b3358	0.48	-0.4
3,485,832	-	yhfK	b3358	0.48	-0.3
3,485,844	-	yhfK	b3358	0.49	-1.2
3,485,847	-	yhfK	b3358	0.49	-0.8
3,485,847	-	yhfK	b3358	0.49	-0.4
3,485,847	-	yhfK	b3358	0.49	-1.1
3,485,911	+	yhfK	b3358	0.52	-0.4
3,485,911	+	yhfK	b3358	0.52	+4.4
3,485,911	+	yhfK	b3358	0.52	+4.6
3,485,912	-	yhfK	b3358	0.52	+0.3
3,485,912	-	yhfK	b3358	0.52	-0.0
3,485,916	+	yhfK	b3358	0.52	+0.3
3,485,916	+	yhfK	b3358	0.52	+0.1
3,485,916	+	yhfK	b3358	0.52	-0.5
3,485,916	+	yhfK	b3358	0.52	-1.0
3,485,919	-	yhfK	b3358	0.53	-0.7
3,485,919	-	yhfK	b3358	0.53	-1.0
3,485,919	-	yhfK	b3358	0.53	-0.8
3,485,936	+	yhfK	b3358	0.53	-0.6
3,485,943	+	yhfK	b3358	0.54	+0.3
3,485,944	-	yhfK	b3358	0.54	-0.5
3,485,959	+	yhfK	b3358	0.54	-0.7
3,485,959	+	yhfK	b3358	0.54	-1.0
3,485,998	+	yhfK	b3358	0.56	-1.2
3,486,010	+	yhfK	b3358	0.57	+0.2
3,486,015	-	yhfK	b3358	0.57	+0.4
3,486,045	-	yhfK	b3358	0.59	-0.7
3,486,056	-	yhfK	b3358	0.59	-0.8
3,486,077	-	yhfK	b3358	0.60	-0.1
3,486,137	-	yhfK	b3358	0.63	-0.7
3,486,143	+	yhfK	b3358	0.63	+0.3
3,486,151	-	yhfK	b3358	0.64	-1.0
3,486,151	-	yhfK	b3358	0.64	-1.9
3,486,153	+	yhfK	b3358	0.64	-0.6
3,486,161	-	yhfK	b3358	0.64	-0.9
3,486,163	-	yhfK	b3358	0.64	-1.1
3,486,163	-	yhfK	b3358	0.64	-1.0
3,486,163	-	yhfK	b3358	0.64	-0.7
3,486,163	-	yhfK	b3358	0.64	-1.2
3,486,173	+	yhfK	b3358	0.65	-0.2
3,486,179	-	yhfK	b3358	0.65	-0.7
3,486,220	-	yhfK	b3358	0.67	-0.4
3,486,229	+	yhfK	b3358	0.67	-0.2
3,486,229	+	yhfK	b3358	0.67	-0.3
3,486,229	+	yhfK	b3358	0.67	-1.1
3,486,229	+	yhfK	b3358	0.67	-0.4
3,486,229	+	yhfK	b3358	0.67	-0.7
3,486,229	+	yhfK	b3358	0.67	-0.9
3,486,229	+	yhfK	b3358	0.67	-1.0
3,486,229	+	yhfK	b3358	0.67	-0.6
3,486,229	+	yhfK	b3358	0.67	-0.2
3,486,229	+	yhfK	b3358	0.67	-0.3
3,486,229	+	yhfK	b3358	0.67	-0.2
3,486,229	-	yhfK	b3358	0.67	-0.5
3,486,237	-	yhfK	b3358	0.68	-1.6
3,486,237	-	yhfK	b3358	0.68	-1.4
3,486,237	-	yhfK	b3358	0.68	+0.0
3,486,237	-	yhfK	b3358	0.68	+0.0
3,486,237	-	yhfK	b3358	0.68	-1.2
3,486,237	-	yhfK	b3358	0.68	+0.0
3,486,237	-	yhfK	b3358	0.68	-0.4
3,486,237	-	yhfK	b3358	0.68	-1.4
3,486,237	-	yhfK	b3358	0.68	-0.4
3,486,237	-	yhfK	b3358	0.68	-0.4
3,486,238	-	yhfK	b3358	0.68	-0.6
3,486,238	-	yhfK	b3358	0.68	-1.4
3,486,238	-	yhfK	b3358	0.68	-0.0
3,486,267	+	yhfK	b3358	0.69	-2.1
3,486,267	+	yhfK	b3358	0.69	-0.1
3,486,267	+	yhfK	b3358	0.69	-0.2
3,486,294	+	yhfK	b3358	0.70	-0.0
3,486,294	+	yhfK	b3358	0.70	-0.4
3,486,326	+	yhfK	b3358	0.72	-0.6
3,486,326	+	yhfK	b3358	0.72	-1.0
3,486,326	-	yhfK	b3358	0.72	-1.6
3,486,328	+	yhfK	b3358	0.72	-1.3
3,486,328	+	yhfK	b3358	0.72	-0.2
3,486,336	-	yhfK	b3358	0.72	-1.4
3,486,336	-	yhfK	b3358	0.72	-0.3
3,486,355	-	yhfK	b3358	0.73	-0.3
3,486,355	-	yhfK	b3358	0.73	+0.7
3,486,371	-	yhfK	b3358	0.74	-0.9
3,486,371	-	yhfK	b3358	0.74	-1.0
3,486,388	-	yhfK	b3358	0.75	-0.9
3,486,399	-	yhfK	b3358	0.75	-0.4
3,486,399	-	yhfK	b3358	0.75	-0.2
3,486,418	-	yhfK	b3358	0.76	-0.6
3,486,418	-	yhfK	b3358	0.76	-0.1
3,486,423	-	yhfK	b3358	0.77	-2.1
3,486,429	+	yhfK	b3358	0.77	-1.0
3,486,435	+	yhfK	b3358	0.77	-0.8
3,486,450	-	yhfK	b3358	0.78	-0.6
3,486,475	+	yhfK	b3358	0.79	-1.1
3,486,475	+	yhfK	b3358	0.79	+2.5
3,486,478	+	yhfK	b3358	0.79	-1.9
3,486,478	-	yhfK	b3358	0.79	+0.1
3,486,487	+	yhfK	b3358	0.80	-0.6
3,486,489	+	yhfK	b3358	0.80	-0.9
3,486,489	+	yhfK	b3358	0.80	-0.0
3,486,495	-	yhfK	b3358	0.80	-0.6
3,486,495	-	yhfK	b3358	0.80	-0.8
3,486,495	-	yhfK	b3358	0.80	+1.0
3,486,497	-	yhfK	b3358	0.80	-0.5
3,486,497	-	yhfK	b3358	0.80	-0.8
3,486,497	-	yhfK	b3358	0.80	-1.2
3,486,497	-	yhfK	b3358	0.80	+0.0
3,486,523	+	yhfK	b3358	0.81	-0.5
3,486,536	-	yhfK	b3358	0.82	-2.1
3,486,576	+	yhfK	b3358	0.84	-0.6
3,486,576	+	yhfK	b3358	0.84	-1.2
3,486,584	-	yhfK	b3358	0.84	-0.3
3,486,584	-	yhfK	b3358	0.84	-1.3
3,486,586	+	yhfK	b3358	0.84	-1.1
3,486,605	-	yhfK	b3358	0.85	-1.1
3,486,616	-	yhfK	b3358	0.86	-0.1
3,486,616	-	yhfK	b3358	0.86	-1.0
3,486,622	+	yhfK	b3358	0.86	-1.1
3,486,643	-	yhfK	b3358	0.87	-1.4
3,486,643	-	yhfK	b3358	0.87	-0.2
3,486,664	-	yhfK	b3358	0.88	-1.2
3,486,703	+	yhfK	b3358	0.90	-0.3
3,486,703	+	yhfK	b3358	0.90	+0.2
3,486,703	+	yhfK	b3358	0.90	-0.8
3,486,705	-				-0.9
3,486,710	-				-0.8
3,486,717	+				-0.3
3,486,722	+				+0.5
3,486,722	+				-0.7
3,486,722	+				-0.4
3,486,722	+				-0.6
3,486,730	-				+1.1
3,486,732	+				+0.1
3,486,737	+				-0.8
3,486,737	+				-0.4
3,486,819	+				+0.6
3,486,819	+				-1.4
3,486,819	+				-0.0
3,486,819	+				-0.5
3,486,824	+				-0.7
3,486,824	+				-1.6
3,486,832	-				-0.3
3,486,832	-				-1.1
3,486,876	-				-0.8
3,486,876	-				+0.4
3,486,887	+				-0.4
3,486,910	-				-0.1
3,486,928	-				-1.7
3,486,933	+				+0.4
3,486,933	+				-0.0
3,486,940	-				+0.7
3,486,940	-				+0.1
3,486,960	+				+0.0
3,486,966	+				+0.1
3,486,985	+				+0.1
3,486,985	+				-0.7
3,487,029	-				+0.4
3,487,055	+				+0.7
3,487,056	-				+0.4
3,487,063	-				+0.3
3,487,070	-				-0.3
3,487,072	+				+1.3
3,487,080	+				+0.3
3,487,083	-				-0.1
3,487,083	-				-0.5
3,487,101	+				-0.7
3,487,101	-				-0.4
3,487,101	-				+0.3
3,487,113	+	argD	b3359	0.11	-0.3
3,487,114	-	argD	b3359	0.11	-0.7
3,487,149	-	argD	b3359	0.14	-1.3
3,487,149	-	argD	b3359	0.14	+0.2
3,487,175	+	argD	b3359	0.16	+0.5
3,487,175	-	argD	b3359	0.16	+0.0
3,487,185	+	argD	b3359	0.17	+0.8
3,487,185	+	argD	b3359	0.17	+0.4
3,487,193	-	argD	b3359	0.17	+0.0
3,487,193	-	argD	b3359	0.17	-0.4
3,487,202	+	argD	b3359	0.18	+0.8
3,487,202	+	argD	b3359	0.18	+0.6
3,487,204	+	argD	b3359	0.18	+1.7
3,487,212	-	argD	b3359	0.19	-0.8
3,487,214	+	argD	b3359	0.19	-0.1
3,487,224	+	argD	b3359	0.20	+0.1
3,487,239	-	argD	b3359	0.21	-0.3
3,487,276	+	argD	b3359	0.24	+0.0
3,487,302	-	argD	b3359	0.26	-0.2
3,487,320	+	argD	b3359	0.28	+0.1
3,487,320	+	argD	b3359	0.28	-0.4
3,487,320	+	argD	b3359	0.28	+0.2
3,487,328	-	argD	b3359	0.28	-0.4
3,487,333	-	argD	b3359	0.29	+0.5
3,487,337	+	argD	b3359	0.29	-0.1
3,487,338	-	argD	b3359	0.29	+0.2
3,487,348	+	argD	b3359	0.30	+0.3
3,487,348	+	argD	b3359	0.30	-0.2
3,487,373	-	argD	b3359	0.32	-1.3
3,487,373	-	argD	b3359	0.32	+0.4
3,487,373	-	argD	b3359	0.32	+0.8
3,487,407	-	argD	b3359	0.35	+0.3
3,487,447	+	argD	b3359	0.38	-0.2
3,487,455	-	argD	b3359	0.39	-0.2
3,487,469	-	argD	b3359	0.40	-0.4
3,487,469	-	argD	b3359	0.40	+1.0
3,487,475	-	argD	b3359	0.40	+1.0
3,487,475	-	argD	b3359	0.40	-0.5
3,487,511	-	argD	b3359	0.43	+0.1
3,487,511	-	argD	b3359	0.43	+0.9
3,487,524	-				+0.5
3,487,531	+	argD	b3359	0.45	-0.0
3,487,578	-	argD	b3359	0.49	-0.2
3,487,619	-	argD	b3359	0.52	+0.3
3,487,650	-	argD	b3359	0.55	+0.1
3,487,650	-	argD	b3359	0.55	+0.3
3,487,650	-	argD	b3359	0.55	-0.2
3,487,657	-	argD	b3359	0.55	+0.9
3,487,662	+	argD	b3359	0.56	+0.1
3,487,675	+	argD	b3359	0.57	+0.1
3,487,681	+	argD	b3359	0.57	+0.2
3,487,681	+	argD	b3359	0.57	-0.1
3,487,687	-	argD	b3359	0.58	-0.1
3,487,687	-	argD	b3359	0.58	-1.6
3,487,687	-	argD	b3359	0.58	+0.1
3,487,694	+	argD	b3359	0.58	+0.1
3,487,765	-	argD	b3359	0.64	-0.7
3,487,784	+	argD	b3359	0.66	-0.2
3,487,784	+	argD	b3359	0.66	+0.8
3,487,818	+	argD	b3359	0.68	+0.6
3,487,826	-	argD	b3359	0.69	+1.0
3,487,826	-	argD	b3359	0.69	-1.3
3,487,830	+	argD	b3359	0.69	+0.5
3,487,834	+	argD	b3359	0.70	-0.2
3,487,859	-	argD	b3359	0.72	-0.2
3,487,894	+	argD	b3359	0.75	+1.2