Strain Fitness in Escherichia coli BW25113 around b3223

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
3,367,386	-	yhcH	b3221	0.75	-1.8
3,367,386	-	yhcH	b3221	0.75	+0.4
3,367,444	-	yhcH	b3221	0.88	+0.2
3,367,452	-	yhcH	b3221	0.89	+0.4
3,367,454	+				+0.1
3,367,480	-				-0.1
3,367,480	-				+0.2
3,367,489	+				+0.1
3,367,523	-				+0.2
3,367,600	+	yhcI	b3222	0.12	-1.1
3,367,600	+	yhcI	b3222	0.12	-0.4
3,367,666	-	yhcI	b3222	0.19	-0.1
3,367,678	+	yhcI	b3222	0.21	+0.4
3,367,678	+	yhcI	b3222	0.21	+0.5
3,367,691	+	yhcI	b3222	0.22	-0.3
3,367,691	+	yhcI	b3222	0.22	+1.0
3,367,725	+	yhcI	b3222	0.26	+0.5
3,367,728	+	yhcI	b3222	0.26	-0.3
3,367,768	-	yhcI	b3222	0.31	-0.7
3,367,855	-	yhcI	b3222	0.41	-2.1
3,367,855	-	yhcI	b3222	0.41	+0.3
3,367,901	+	yhcI	b3222	0.46	-0.3
3,368,002	+	yhcI	b3222	0.58	+0.5
3,368,179	-	yhcI	b3222	0.78	+0.0
3,368,179	-	yhcI	b3222	0.78	-0.2
3,368,184	-	yhcI	b3222	0.78	-0.7
3,368,285	+				+2.1
3,368,327	-				-0.4
3,368,368	+				-0.7
3,368,585	+	nanE	b3223	0.31	-0.1
3,368,593	-	nanE	b3223	0.32	-0.3
3,368,696	-	nanE	b3223	0.47	-0.5
3,368,699	+	nanE	b3223	0.48	+0.4
3,368,699	+	nanE	b3223	0.48	+0.1
3,368,703	+	nanE	b3223	0.48	+0.5
3,368,768	+	nanE	b3223	0.58	-0.1
3,368,780	+	nanE	b3223	0.60	-0.3
3,368,791	+	nanE	b3223	0.61	+0.2
3,368,791	+	nanE	b3223	0.61	+0.1
3,368,887	+	nanE	b3223	0.75	+0.0
3,368,989	-	nanE	b3223	0.90	-0.7
3,368,989	-	nanE	b3223	0.90	+0.4
3,369,084	+				-0.6
3,369,297	+	nanT	b3224	0.13	+0.1
3,369,480	+	nanT	b3224	0.25	-1.1
3,369,488	-	nanT	b3224	0.26	+0.1
3,369,488	-	nanT	b3224	0.26	-0.3
3,369,538	-	nanT	b3224	0.29	+0.1
3,369,640	+	nanT	b3224	0.36	-0.7
3,369,669	+	nanT	b3224	0.38	-0.4
3,369,791	-	nanT	b3224	0.46	-0.6
3,369,793	+	nanT	b3224	0.46	+0.0
3,369,831	-	nanT	b3224	0.49	-0.2
3,369,941	+	nanT	b3224	0.56	-1.5
3,370,043	-	nanT	b3224	0.63	-0.2