Strain Fitness in Escherichia coli BW25113 around b3196

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
3,337,328	+				-0.3
3,337,331	+				+0.5
3,337,331	+				+1.6
3,337,334	-				+0.3
3,337,334	-				-0.7
3,337,334	-				+0.5
3,337,343	+				+0.2
3,337,351	-				-0.9
3,337,351	-				+1.1
3,337,397	+	yrbF	b3195	0.15	+0.3
3,337,398	-	yrbF	b3195	0.15	-0.0
3,337,402	+	yrbF	b3195	0.15	-0.1
3,337,448	+	yrbF	b3195	0.21	+1.2
3,337,448	+	yrbF	b3195	0.21	+0.3
3,337,458	+	yrbF	b3195	0.22	+0.2
3,337,475	-	yrbF	b3195	0.24	+0.5
3,337,505	-	yrbF	b3195	0.28	+0.3
3,337,518	-	yrbF	b3195	0.30	-0.5
3,337,663	-	yrbF	b3195	0.48	+0.6
3,337,663	-	yrbF	b3195	0.48	-0.2
3,337,677	-	yrbF	b3195	0.49	+0.1
3,337,677	-	yrbF	b3195	0.49	+0.0
3,337,677	-	yrbF	b3195	0.49	-0.7
3,337,686	-	yrbF	b3195	0.50	-0.2
3,337,698	+	yrbF	b3195	0.52	-0.1
3,337,698	+	yrbF	b3195	0.52	+0.8
3,337,704	+	yrbF	b3195	0.53	+0.3
3,337,742	+	yrbF	b3195	0.57	-1.0
3,337,750	-	yrbF	b3195	0.58	+0.2
3,337,751	+	yrbF	b3195	0.58	+0.2
3,337,762	+	yrbF	b3195	0.60	-0.1
3,337,784	-	yrbF	b3195	0.62	+0.4
3,337,794	+	yrbF	b3195	0.64	-0.3
3,337,795	+	yrbF	b3195	0.64	+0.1
3,337,795	+	yrbF	b3195	0.64	+0.4
3,337,841	+	yrbF	b3195	0.70	+0.2
3,337,841	+	yrbF	b3195	0.70	-0.2
3,337,843	+	yrbF	b3195	0.70	+0.7
3,337,843	+	yrbF	b3195	0.70	+0.2
3,337,849	-	yrbF	b3195	0.70	+0.7
3,337,849	-	yrbF	b3195	0.70	+0.4
3,337,849	-	yrbF	b3195	0.70	+0.2
3,337,851	-	yrbF	b3195	0.71	+0.3
3,337,851	-	yrbF	b3195	0.71	-0.0
3,337,851	-	yrbF	b3195	0.71	+0.8
3,337,851	-	yrbF	b3195	0.71	+0.3
3,337,851	-	yrbF	b3195	0.71	+0.7
3,337,851	-	yrbF	b3195	0.71	+0.6
3,337,851	-	yrbF	b3195	0.71	-0.6
3,337,893	-	yrbF	b3195	0.76	+0.2
3,337,899	+	yrbF	b3195	0.77	+0.3
3,337,906	-	yrbF	b3195	0.78	+1.6
3,337,906	-	yrbF	b3195	0.78	+0.6
3,338,003	+	yrbF	b3195	0.90	+0.6
3,338,084	+				+0.6
3,338,113	+				-0.4
3,338,132	+				+0.4
3,338,145	-				+0.3
3,338,170	-				-0.2
3,338,254	+				+1.1
3,338,278	+				+0.1
3,338,300	-				-0.6
3,338,357	-				-0.4
3,338,357	-				+0.3
3,338,436	-	yrbG	b3196	0.14	+0.6
3,338,436	-	yrbG	b3196	0.14	-0.1
3,338,436	-	yrbG	b3196	0.14	+0.5
3,338,436	-	yrbG	b3196	0.14	+0.5
3,338,462	+	yrbG	b3196	0.17	+0.9
3,338,503	+	yrbG	b3196	0.21	-0.1
3,338,508	+	yrbG	b3196	0.22	+0.7
3,338,508	+	yrbG	b3196	0.22	+0.5
3,338,553	+	yrbG	b3196	0.26	+0.6
3,338,591	+	yrbG	b3196	0.30	+0.7
3,338,594	+	yrbG	b3196	0.30	+1.2
3,338,601	+	yrbG	b3196	0.31	+1.1
3,338,612	+	yrbG	b3196	0.32	+1.6
3,338,612	+	yrbG	b3196	0.32	+1.4
3,338,626	+	yrbG	b3196	0.34	+1.1
3,338,629	-	yrbG	b3196	0.34	-0.3
3,338,629	-	yrbG	b3196	0.34	-1.1
3,338,643	+	yrbG	b3196	0.35	+0.2
3,338,646	-	yrbG	b3196	0.36	+0.6
3,338,651	-	yrbG	b3196	0.36	+0.6
3,338,693	-				-0.0
3,338,714	-	yrbG	b3196	0.43	-0.1
3,338,714	-	yrbG	b3196	0.43	+0.4
3,338,714	-	yrbG	b3196	0.43	-0.8
3,338,722	-	yrbG	b3196	0.43	-0.2
3,338,768	-	yrbG	b3196	0.48	-0.4
3,338,789	+	yrbG	b3196	0.50	+1.4
3,338,792	-	yrbG	b3196	0.51	-0.8
3,338,797	-	yrbG	b3196	0.51	-0.0
3,338,797	-	yrbG	b3196	0.51	+0.1
3,338,876	+	yrbG	b3196	0.59	+1.0
3,338,891	+	yrbG	b3196	0.61	+0.8
3,338,897	+	yrbG	b3196	0.61	+1.1
3,338,960	-	yrbG	b3196	0.68	+0.1
3,338,984	-	yrbG	b3196	0.70	+0.1
3,339,031	-	yrbG	b3196	0.75	+0.2
3,339,092	-	yrbG	b3196	0.81	+0.5
3,339,092	-	yrbG	b3196	0.81	+0.7
3,339,107	+	yrbG	b3196	0.83	+1.1
3,339,107	+	yrbG	b3196	0.83	+0.9
3,339,115	-	yrbG	b3196	0.84	+1.0
3,339,122	-	yrbG	b3196	0.84	+0.9
3,339,122	-	yrbG	b3196	0.84	-0.6
3,339,209	-				+0.4
3,339,209	-				-0.5
3,339,239	+				+1.6
3,339,255	+				+1.3
3,339,255	+				+0.7
3,339,301	+				+0.9
3,339,309	-				+0.2
3,339,309	-				+0.7
3,339,309	-				+0.3
3,339,346	+				+1.3
3,339,346	+				+0.5
3,339,350	+				+1.3
3,339,417	-	kdsD	b3197	0.13	+0.1
3,339,447	+	kdsD	b3197	0.16	+0.9
3,339,516	-	kdsD	b3197	0.23	+0.9
3,339,536	+	kdsD	b3197	0.25	+0.3
3,339,579	-	kdsD	b3197	0.29	+0.3
3,339,579	-	kdsD	b3197	0.29	+0.2
3,339,584	+	kdsD	b3197	0.30	+0.5
3,339,590	-	kdsD	b3197	0.31	-0.3
3,339,596	+	kdsD	b3197	0.31	+0.9
3,339,596	+	kdsD	b3197	0.31	+1.0
3,339,604	-	kdsD	b3197	0.32	-1.7
3,339,635	-	kdsD	b3197	0.35	+1.2
3,339,649	-	kdsD	b3197	0.37	-0.3
3,339,649	-	kdsD	b3197	0.37	-0.2
3,339,719	+	kdsD	b3197	0.44	+1.5
3,339,720	-	kdsD	b3197	0.44	-0.0
3,339,720	-	kdsD	b3197	0.44	+0.5
3,339,773	+	kdsD	b3197	0.49	+1.2
3,339,773	+	kdsD	b3197	0.49	+1.6
3,339,778	-	kdsD	b3197	0.50	-1.1
3,339,778	-	kdsD	b3197	0.50	+0.2
3,339,778	-	kdsD	b3197	0.50	-0.3
3,339,791	+	kdsD	b3197	0.51	+1.3
3,339,791	+	kdsD	b3197	0.51	+1.8
3,339,829	-	kdsD	b3197	0.55	-0.0
3,339,864	+	kdsD	b3197	0.58	+0.5
3,339,868	-	kdsD	b3197	0.59	-0.2
3,339,876	+	kdsD	b3197	0.60	+0.8
3,339,879	-	kdsD	b3197	0.60	-0.3
3,339,879	-	kdsD	b3197	0.60	-1.0
3,339,924	+	kdsD	b3197	0.64	+1.0
3,339,974	+	kdsD	b3197	0.70	+1.1
3,340,032	+	kdsD	b3197	0.75	+1.4
3,340,105	-	kdsD	b3197	0.83	+0.7
3,340,129	+	kdsD	b3197	0.85	+1.1
3,340,129	+	kdsD	b3197	0.85	+0.9
3,340,203	+				+1.6
3,340,203	+				+1.2
3,340,231	+				+1.4
3,340,269	+				+1.4