Strain Fitness in Escherichia coli BW25113 around b1040

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,100,805	+	csgG	b1037	0.88	+0.5
1,100,813	-	csgG	b1037	0.89	+1.5
1,100,848	-				-1.7
1,100,850	+				+0.8
1,100,861	+				+1.8
1,100,866	+				-0.1
1,100,866	+				+0.4
1,100,962	+				+0.1
1,100,969	+				+1.0
1,101,017	-	csgF	b1038	0.20	+2.4
1,101,018	+	csgF	b1038	0.20	+1.9
1,101,061	+	csgF	b1038	0.30	+0.2
1,101,144	+	csgF	b1038	0.50	+1.1
1,101,156	+	csgF	b1038	0.53	-1.2
1,101,176	+	csgF	b1038	0.58	+1.5
1,101,329	-				+2.4
1,101,414	-	csgE	b1039	0.10	+1.4
1,101,436	-	csgE	b1039	0.16	+2.4
1,101,442	-	csgE	b1039	0.17	+1.4
1,101,453	-	csgE	b1039	0.20	-0.2
1,101,547	-	csgE	b1039	0.44	+0.3
1,101,554	-	csgE	b1039	0.46	-0.9
1,101,568	-	csgE	b1039	0.49	+1.4
1,101,568	-	csgE	b1039	0.49	+0.8
1,101,568	-	csgE	b1039	0.49	-0.6
1,101,574	-	csgE	b1039	0.51	+1.8
1,101,584	-	csgE	b1039	0.54	+0.3
1,101,597	-	csgE	b1039	0.57	+0.4
1,101,597	-	csgE	b1039	0.57	+0.2
1,101,615	-	csgE	b1039	0.62	+0.0
1,101,615	-	csgE	b1039	0.62	-2.3
1,101,639	-	csgE	b1039	0.68	+0.6
1,101,655	-	csgE	b1039	0.72	-0.3
1,101,664	-	csgE	b1039	0.74	+2.4
1,101,667	+	csgE	b1039	0.75	+1.4
1,101,669	-	csgE	b1039	0.75	-0.1
1,101,678	-	csgE	b1039	0.78	+0.2
1,101,678	-	csgE	b1039	0.78	-0.6
1,101,685	-	csgE	b1039	0.79	+0.2
1,101,686	-	csgE	b1039	0.80	+0.3
1,101,686	-	csgE	b1039	0.80	+0.2
1,101,690	+	csgE	b1039	0.81	+2.4
1,101,698	-	csgE	b1039	0.83	-0.2
1,101,700	-	csgE	b1039	0.83	+0.6
1,101,700	-	csgE	b1039	0.83	+1.2
1,101,710	+	csgE	b1039	0.86	+0.4
1,101,712	-	csgE	b1039	0.86	-1.4
1,101,779	+				+1.4
1,101,799	-				+0.0
1,101,966	-	csgD	b1040	0.30	+1.2
1,101,973	+	csgD	b1040	0.31	+2.2
1,101,981	-	csgD	b1040	0.33	+2.4
1,101,995	+	csgD	b1040	0.35	-0.2
1,102,006	-	csgD	b1040	0.36	+1.4
1,102,028	+	csgD	b1040	0.40	+1.9
1,102,028	+	csgD	b1040	0.40	-1.3
1,102,060	-	csgD	b1040	0.45	+2.4
1,102,120	+	csgD	b1040	0.54	+3.5
1,102,334	-	csgD	b1040	0.87	+2.4
1,102,334	-	csgD	b1040	0.87	+2.4
1,102,458	-				+0.4
1,102,460	-				-0.3
1,102,460	-				-0.8
1,102,483	-				+1.5
1,102,486	-				+3.6
1,102,504	-				+3.9
1,102,504	-				+4.2
1,102,514	-				+2.4
1,102,514	-				-1.0
1,102,851	+				+1.4
1,102,865	+				+2.4
1,102,895	+				+1.4
1,102,901	+				+2.4
1,102,901	+				+0.8
1,102,919	+				+1.4
1,103,158	+				+0.8
1,103,159	+				+1.4
1,103,312	-	csgB	b1041	0.30	+2.4
1,103,341	-	csgB	b1041	0.37	+0.4
1,103,354	+	csgB	b1041	0.39	+0.1
1,103,362	-	csgB	b1041	0.41	-0.0
1,103,371	+	csgB	b1041	0.43	-0.3
1,103,395	+	csgB	b1041	0.48	-0.6
1,103,395	+	csgB	b1041	0.48	-1.1
1,103,399	+	csgB	b1041	0.49	+1.2
1,103,399	+	csgB	b1041	0.49	-0.2