Strain Fitness in Escherichia coli BW25113 around b1033

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,096,126	+				+2.0
1,096,133	-				-0.8
1,096,134	+				-1.1
1,096,134	+				+0.3
1,096,142	-				+0.1
1,096,158	+				-0.4
1,096,174	+				+0.8
1,096,381	-				+0.5
1,096,893	-				+0.6
1,096,893	-				-0.3
1,097,109	+				+1.0
1,097,115	-				+0.1
1,097,173	-				-0.6
1,097,180	-				-0.2
1,097,226	+	ycdW	b1033	0.12	+0.2
1,097,339	+	ycdW	b1033	0.24	-0.3
1,097,503	-	ycdW	b1033	0.42	-0.5
1,097,503	-	ycdW	b1033	0.42	-1.0
1,097,550	-	ycdW	b1033	0.47	-0.2
1,097,712	+	ycdW	b1033	0.64	+0.0
1,097,712	+	ycdW	b1033	0.64	-0.1
1,097,736	-	ycdW	b1033	0.67	-0.2
1,097,773	+	ycdW	b1033	0.71	-0.2
1,097,773	+	ycdW	b1033	0.71	+0.3
1,097,786	-	ycdW	b1033	0.72	-0.4
1,097,786	-	ycdW	b1033	0.72	+0.3
1,097,787	-	ycdW	b1033	0.72	-0.3
1,097,787	-	ycdW	b1033	0.72	+0.2
1,097,836	-	ycdW	b1033	0.77	-0.5
1,097,934	-	ycdW	b1033	0.88	+0.1
1,097,941	+	ycdW	b1033	0.89	+0.1
1,098,011	+				-0.1
1,098,107	-				+0.7
1,098,107	-				+0.7
1,098,140	+				-0.1
1,098,174	+				+0.4
1,098,250	+	ycdX	b1034	0.20	+0.1
1,098,274	-	ycdX	b1034	0.23	-0.0
1,098,295	+	ycdX	b1034	0.26	+0.5
1,098,303	-	ycdX	b1034	0.27	-0.4
1,098,304	-	ycdX	b1034	0.27	-0.5
1,098,304	-	ycdX	b1034	0.27	-0.3
1,098,390	-	ycdX	b1034	0.39	+0.0
1,098,390	-	ycdX	b1034	0.39	-0.7
1,098,447	-	ycdX	b1034	0.47	+0.2
1,098,459	+	ycdX	b1034	0.48	+0.0
1,098,465	-	ycdX	b1034	0.49	-2.8
1,098,465	-	ycdX	b1034	0.49	-1.0
1,098,656	-	ycdX	b1034	0.75	-0.8
1,098,800	+				-0.0
1,098,805	+				+0.4
1,098,805	+				+0.4
1,098,810	+				-0.3
1,098,813	-				+0.4
1,098,813	-				+0.6
1,098,826	+				-0.1
1,098,888	-				+1.1
1,098,892	+				+0.4
1,098,924	+	ycdY	b1035	0.11	-0.0
1,098,998	+	ycdY	b1035	0.24	+0.5
1,099,046	+	ycdY	b1035	0.33	+0.1